Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1952g00005 ATGTTGCCAAGCTCAATAACTTGGTTCTCCTGTGTGAATGTAACCAAATACTCATCTATTACAGATTCTTTGGAGATAGAGTCTCTTTCAGTTACCTTCCATGGACATGATCTCATAGTTGATTCAGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTACTTGGGTTAAATGGCTGTGGAAAATCTACTCTGCTCACGGCAATAGGTTGCCGTGAACTTCCAATTCCTGACCACATGGATATTTATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTAGAGGCAGTCGTAAGCTGTGATGAGGAAAGATTGAGATTGGAGAAGGAAGTTGAAGCTTTGGCAGCCCAGGATGATGGAGGTGGTCAATCCCTTGATCTTATATATGAACGACTAGAAGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTCGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATAGCATTAGCACGAGCTCTGTTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAGGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGACCGTATTCTGGTGGTGGTTTCACATTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAATACTGAAGCTGTACACTGGTAACTATGATCAATATGTTCAGACACGTTCTGAGTTGGAGGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGGTTTGGCCATGGTTCAGCAAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTGCGGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCTGTACTCCAGTTTGTTGAGGTGGCATTTGGTTACACTCCTGATAATCTTATCTACAAGAGCCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCATTAGTTGGACCAAATGGTGCTGGGAAGAGTACATTACTGAAGCTAATGACAGGTGAATTGATGCCTACTGATGGCATGGTCCGACGTCATAATCATCTTCGAATTGCACAATATCACCAGCATCTGGCTGAAAAGCTAGACATGGAAGTGTCTGCTCTCCAGTATATGATGAGAGAATACCCTGGTATTGAAGAAGAGAAGATGAGGGCAGCTGTTGGGAAGTTTGGGCTGTCAGGTAAAGCCCAGGTGATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGTGTGATATTTGCTTGGTTAGCGTGGAGGCAACCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACTATTGACTCATTGGCTGAGGCATTGAATGAATGGGACGGTGGTTTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTTTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGAATTCAAGGCGCATCTCAAGTCGAAGGCGGGTTTATCTGACTGA 1653 0.4416 MLPSSITWFSCVNVTKYSSITDSLEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVVSCDEERLRLEKEVEALAAQDDGGGQSLDLIYERLEALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKILKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVAFGYTPDNLIYKSLDFGVDLDSRIALVGPNGAGKSTLLKLMTGELMPTDGMVRRHNHLRIAQYHQHLAEKLDMEVSALQYMMREYPGIEEEKMRAAVGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKAHLKSKAGLSD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1952g00005 550 Pfam ABC transporter 235 311 IPR032781 -
Gabi1952g00005 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 271 IPR003439 GO:0005524
Gabi1952g00005 550 Coils Coil 242 262 - -
Gabi1952g00005 550 CDD ABCF_EF-3 335 526 - -
Gabi1952g00005 550 FunFam ATP-binding cassette sub-family F member 3 295 549 - -
Gabi1952g00005 550 Pfam ABC transporter 42 196 IPR003439 GO:0005524
Gabi1952g00005 550 Coils Coil 100 120 - -
Gabi1952g00005 550 FunFam Abc transporter f family member 1 24 288 - -
Gabi1952g00005 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 271 IPR027417 -
Gabi1952g00005 550 ProSitePatterns ABC transporters family signature. 168 182 IPR017871 GO:0005524|GO:0016887
Gabi1952g00005 550 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 23 545 - -
Gabi1952g00005 550 Gene3D - 23 288 IPR027417 -
Gabi1952g00005 550 CDD ABCF_EF-3 24 240 - -
Gabi1952g00005 550 SMART AAA_5 48 250 IPR003593 GO:0016887
Gabi1952g00005 550 SMART AAA_5 360 526 IPR003593 GO:0016887
Gabi1952g00005 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 335 550 IPR003439 GO:0005524
Gabi1952g00005 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 529 IPR027417 -
Gabi1952g00005 550 Pfam ABC transporter 352 482 IPR003439 GO:0005524
Gabi1952g00005 550 Gene3D - 300 548 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1952g00005 Gabi-Chr1952 49170 53225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1952g00005 335 528 Calmodulin-binding Proteins AT2G36910 25.893 3.70e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1952g00005 K06185 - gmx:100809491 998.808