Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1952g00004 ATGGTTTCCGACGCAAGCAAGAAGAAGGCTGCACAGAAGAAGGCCGCCGCCGCCGCTAAGAGAGGAGGCAAGGCTTCAGCTTCTTCCAAAGCCGTCGATAAGAGCGTCGATAAGGTCGCCGATGGAATCTCCGATATTCAGATTTCGGATCGGACCTGCACCGGCGTCCTCTGCTCCCATCCTCTTTCCAGAGATATTCGGATAGAGTCTCTTTCAGTTACCTTCCATGGACATGATCTCATAGTTGATTCAGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTACTTGGGTTAAATGGCTGTGGAAAATCTACTCTGCTCACGGCAATAGGTTGCCGTGAACTTCCAATTCCTGACCACATGGATATTTATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTAGAGGCAGTCGTAAGCTGTGATGAGGAAAGATTGAGATTGGAGAAGGAAGTTGAAGCTTTGGCAGCCCAGGATGATGGAGGTGGTCAATCCCTTGATCTTATATATGAACGACTAGAAGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTCGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATAGCATTAGCACGAGCTCTGTTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAGGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGACCGTATTCTGGTGGTGGTTTCACATTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAATACTGAAGCTGTACACTGGTAACTATGATCAATATGTTCAGACACGTTCTGAGTTGGAGGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGGTTTGGCCATGGTTCAGCAAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTGCGGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCTGTACTCCAGTTTGTTGAGGTGGCATTTGGTTACACTCCTGATAATCTTATCTACAAGAGCCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCATTAGTTGGACCAAATGGTGCTGGGAAGAGTACATTACTGAAGCTAATGACAGGTGAATTGATGCCTACTGATGGCATGGTCCGACGTCATAATCATCTTCGAATTGCACAATATCACCAGCATCTGGCTGAAAAGCTAGACATGGAAGTGTCTGCTCTCCAGTATATGATGAGAGAATACCCTGGTATTGAAGAAGAGAAGATGAGGGCAGCTGTTGGGAAGTTTGGGCTGTCAGGTAAAGCCCAGGTGATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGTGTGATATTTGCTTGGTTAGCGTGGAGGCAACCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACTATTGACTCATTGGCTGAGGCATTGAATGAATGGGACGGTGGTTTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTTTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGAATTCAAGGCGCATCTCAAGTCGAAGGCGGGTTTATCTGACTGA 1779 0.4576 MVSDASKKKAAQKKAAAAAKRGGKASASSKAVDKSVDKVADGISDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVVSCDEERLRLEKEVEALAAQDDGGGQSLDLIYERLEALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKILKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVAFGYTPDNLIYKSLDFGVDLDSRIALVGPNGAGKSTLLKLMTGELMPTDGMVRRHNHLRIAQYHQHLAEKLDMEVSALQYMMREYPGIEEEKMRAAVGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKAHLKSKAGLSD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1952g00004 592 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524|GO:0016887
Gabi1952g00004 592 FunFam Abc transporter f family member 1 66 330 - -
Gabi1952g00004 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 571 IPR027417 -
Gabi1952g00004 592 Pfam ABC transporter 394 524 IPR003439 GO:0005524
Gabi1952g00004 592 MobiDBLite consensus disorder prediction 1 32 - -
Gabi1952g00004 592 Pfam ABC transporter 84 238 IPR003439 GO:0005524
Gabi1952g00004 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 592 IPR003439 GO:0005524
Gabi1952g00004 592 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 38 587 - -
Gabi1952g00004 592 SMART AAA_5 90 292 IPR003593 GO:0016887
Gabi1952g00004 592 SMART AAA_5 402 568 IPR003593 GO:0016887
Gabi1952g00004 592 CDD ABCF_EF-3 66 282 - -
Gabi1952g00004 592 Coils Coil 284 304 - -
Gabi1952g00004 592 Gene3D - 342 590 IPR027417 -
Gabi1952g00004 592 FunFam ATP-binding cassette sub-family F member 3 337 591 - -
Gabi1952g00004 592 CDD ABCF_EF-3 377 568 - -
Gabi1952g00004 592 Pfam ABC transporter 277 353 IPR032781 -
Gabi1952g00004 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 313 IPR027417 -
Gabi1952g00004 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 313 IPR003439 GO:0005524
Gabi1952g00004 592 Gene3D - 66 330 IPR027417 -
Gabi1952g00004 592 Coils Coil 142 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1952g00004 Gabi-Chr1952 49170 53438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1952g00004 377 570 Calmodulin-binding Proteins AT2G36910 25.893 1.92e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1952g00004 K06185 - gmx:100809491 1056.97