Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi1952g00004 | ATGGTTTCCGACGCAAGCAAGAAGAAGGCTGCACAGAAGAAGGCCGCCGCCGCCGCTAAGAGAGGAGGCAAGGCTTCAGCTTCTTCCAAAGCCGTCGATAAGAGCGTCGATAAGGTCGCCGATGGAATCTCCGATATTCAGATTTCGGATCGGACCTGCACCGGCGTCCTCTGCTCCCATCCTCTTTCCAGAGATATTCGGATAGAGTCTCTTTCAGTTACCTTCCATGGACATGATCTCATAGTTGATTCAGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTACTTGGGTTAAATGGCTGTGGAAAATCTACTCTGCTCACGGCAATAGGTTGCCGTGAACTTCCAATTCCTGACCACATGGATATTTATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTAGAGGCAGTCGTAAGCTGTGATGAGGAAAGATTGAGATTGGAGAAGGAAGTTGAAGCTTTGGCAGCCCAGGATGATGGAGGTGGTCAATCCCTTGATCTTATATATGAACGACTAGAAGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTCGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATAGCATTAGCACGAGCTCTGTTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAGGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGACCGTATTCTGGTGGTGGTTTCACATTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAATACTGAAGCTGTACACTGGTAACTATGATCAATATGTTCAGACACGTTCTGAGTTGGAGGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGGTTTGGCCATGGTTCAGCAAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTGCGGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCTGTACTCCAGTTTGTTGAGGTGGCATTTGGTTACACTCCTGATAATCTTATCTACAAGAGCCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCATTAGTTGGACCAAATGGTGCTGGGAAGAGTACATTACTGAAGCTAATGACAGGTGAATTGATGCCTACTGATGGCATGGTCCGACGTCATAATCATCTTCGAATTGCACAATATCACCAGCATCTGGCTGAAAAGCTAGACATGGAAGTGTCTGCTCTCCAGTATATGATGAGAGAATACCCTGGTATTGAAGAAGAGAAGATGAGGGCAGCTGTTGGGAAGTTTGGGCTGTCAGGTAAAGCCCAGGTGATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGTGTGATATTTGCTTGGTTAGCGTGGAGGCAACCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACTATTGACTCATTGGCTGAGGCATTGAATGAATGGGACGGTGGTTTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTTTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGAATTCAAGGCGCATCTCAAGTCGAAGGCGGGTTTATCTGACTGA | 1779 | 0.4576 | MVSDASKKKAAQKKAAAAAKRGGKASASSKAVDKSVDKVADGISDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVVSCDEERLRLEKEVEALAAQDDGGGQSLDLIYERLEALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKILKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVAFGYTPDNLIYKSLDFGVDLDSRIALVGPNGAGKSTLLKLMTGELMPTDGMVRRHNHLRIAQYHQHLAEKLDMEVSALQYMMREYPGIEEEKMRAAVGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKAHLKSKAGLSD | 592 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi1952g00004 | 592 | ProSitePatterns | ABC transporters family signature. | 210 | 224 | IPR017871 | GO:0005524|GO:0016887 | |
Gabi1952g00004 | 592 | FunFam | Abc transporter f family member 1 | 66 | 330 | - | - | |
Gabi1952g00004 | 592 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 361 | 571 | IPR027417 | - | |
Gabi1952g00004 | 592 | Pfam | ABC transporter | 394 | 524 | IPR003439 | GO:0005524 | |
Gabi1952g00004 | 592 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Gabi1952g00004 | 592 | Pfam | ABC transporter | 84 | 238 | IPR003439 | GO:0005524 | |
Gabi1952g00004 | 592 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 377 | 592 | IPR003439 | GO:0005524 | |
Gabi1952g00004 | 592 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 38 | 587 | - | - | |
Gabi1952g00004 | 592 | SMART | AAA_5 | 90 | 292 | IPR003593 | GO:0016887 | |
Gabi1952g00004 | 592 | SMART | AAA_5 | 402 | 568 | IPR003593 | GO:0016887 | |
Gabi1952g00004 | 592 | CDD | ABCF_EF-3 | 66 | 282 | - | - | |
Gabi1952g00004 | 592 | Coils | Coil | 284 | 304 | - | - | |
Gabi1952g00004 | 592 | Gene3D | - | 342 | 590 | IPR027417 | - | |
Gabi1952g00004 | 592 | FunFam | ATP-binding cassette sub-family F member 3 | 337 | 591 | - | - | |
Gabi1952g00004 | 592 | CDD | ABCF_EF-3 | 377 | 568 | - | - | |
Gabi1952g00004 | 592 | Pfam | ABC transporter | 277 | 353 | IPR032781 | - | |
Gabi1952g00004 | 592 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 60 | 313 | IPR027417 | - | |
Gabi1952g00004 | 592 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 66 | 313 | IPR003439 | GO:0005524 | |
Gabi1952g00004 | 592 | Gene3D | - | 66 | 330 | IPR027417 | - | |
Gabi1952g00004 | 592 | Coils | Coil | 142 | 162 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi1952g00004 | Gabi-Chr1952 | 49170 | 53438 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi1952g00004 | 377 | 570 | Calmodulin-binding Proteins | AT2G36910 | 25.893 | 1.92e-09 | 58.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi1952g00004 | K06185 | - | gmx:100809491 | 1056.97 |