Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi194g00013 ATGAATCACTGCGTTCCAGATTTCGAAATCCAAATGGAAAACGACGAAGAATACCAAATACACTTCTCAAAGAAACCTTCCATGCAAAACGACGAGATCATGGAACTATTATGGCAAAACGGTCAGGTCGTGATGCATAGCCAAAACCAACGACCATTCAGAAAACCGCCATCGCCGAGGAACAATAACTACCGCGACGGCGTGTTTCCGGCGAGGGAGATTCCATCCTCCGAAGCAGAAAACTACAGCAACCAACACCTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATTCAATCAACGAAGATCCTCCCTTCGATCACCATGATTTCTGCGCCGACATCTTCCGTCCGCCGCCCGCCGTTAACGGCAGCCAGAATCACAACAGTGCCATGCAAAACCCCCTCCGTACGGCGACTCCTCGGCCTCCGATTCCGCCGTCGAGGATGCCGGAGCAGGCGGCGAGCAGGATACAGAATTTCGCGCACTTCTCGAAGCAAAACAACGTTAGGACTGAGCCGGGACCGCCGTCGAGTTCGAATACCGCGACGGCGCGGGAATCGACGGTGGTCGATTCGTGCGACGTGTCGGTGGCGACGGCGACAGTGGCCTCCAAGACCTCGGCGGAGCGCGGGGAGACCTGCAGCGAGATCATGATCGCCGCCGTCAAAGCGGCTCCGGCAGGCGGAAGGGAGACAGCGGCGTTCGAGATGACGGCGACGTCATCGCCAGGCTGTTCGAGCGAGAGCGCTGAACCGGATCAGAGGGAACAAGTGGTGGACCGGAAGAGGAAGGGTCGGGAACCGGAGGAATCGGAGTTTCAGAGCGAGGATGTCGACTTTGAATCTCTGGAAGCCAAAAAACAATACCGTGGTTCTACATCTAGAAAGAGATCTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAAGCGTCGTGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCCTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATACGGCATGGTACCTATGATGTTTCCAGGAATTCAGCAGTATATGCCGCCAATGGGAATGGGGATTGGAATGGGTATGGGCATGGAAATGGGAATGAACAGACCAGTAATTCCATTTCCCAATATGTTAGTTAGTTCAGCTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTCCCTATACCTCCTTTCCATATGCCCCATGTTCCTGCACCTGATTCATCCAGAATGCAAGCAGCAAACCAGTCAGATAATGTGCTTAACTCACTTGGTACCACTGATCCTGATCAATCACGTATCCCAAATTTCACTGATCCTTATCAGCAATACCTCGGTCCCCACCATGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTCAGCAAGCCAAGTACCAGTAGGGGCAAAGAGAATCCAGAAAAGCAGCAATCAGAAGAAACATGA 1539 0.5114 MNHCVPDFEIQMENDEEYQIHFSKKPSMQNDEIMELLWQNGQVVMHSQNQRPFRKPPSPRNNNYRDGVFPAREIPSSEAENYSNQHLFMQEDEMASWLHYSINEDPPFDHHDFCADIFRPPPAVNGSQNHNSAMQNPLRTATPRPPIPPSRMPEQAASRIQNFAHFSKQNNVRTEPGPPSSSNTATARESTVVDSCDVSVATATVASKTSAERGETCSEIMIAAVKAAPAGGRETAAFEMTATSSPGCSSESAEPDQREQVVDRKRKGREPEESEFQSEDVDFESLEAKKQYRGSTSRKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGYGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVIPFPNMLVSSALPAATAAAHLGPRFPIPPFHMPHVPAPDSSRMQAANQSDNVLNSLGTTDPDQSRIPNFTDPYQQYLGPHHVQLQLMQAMNQPNVSKPSTSRGKENPEKQQSEET 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi194g00013 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 380 IPR036638 GO:0046983
Gabi194g00013 512 Pfam Helix-loop-helix DNA-binding domain 306 352 IPR011598 GO:0046983
Gabi194g00013 512 FunFam Basic helix-loop-helix transcription factor 297 360 - -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 256 274 - -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 241 255 - -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 170 194 - -
Gabi194g00013 512 Gene3D - 297 360 IPR036638 GO:0046983
Gabi194g00013 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Gabi194g00013 512 CDD bHLH_AtPIF_like 302 365 IPR047265 -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 241 312 - -
Gabi194g00013 512 Coils Coil 308 328 - -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 449 512 - -
Gabi194g00013 512 SMART finulus 308 357 IPR011598 GO:0046983
Gabi194g00013 512 MobiDBLite consensus disorder prediction 449 468 - -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 282 312 - -
Gabi194g00013 512 MobiDBLite consensus disorder prediction 482 498 - -
Gabi194g00013 512 PANTHER TRANSCRIPTION FACTOR PIF3 18 455 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi194g00013 Gabi-Chr194 105627 110459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi194g00013 1 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.895 2.38e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi194g00013 HLH 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi194g00013 - - gmx:100788491 673.7