Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi194g00003 ATGGCCGGTAAAGGAGAGGGTCCAGCCATCGGAATCGATCTCGGAACGACGTATTCCTGCGTCGGTGTTTGGCAACATGATCGTGTTGAGATCATAGCTAATGACCAGGGAAACAGAACGACGCCGTCTTACGTCGGATTCACTGACACCGAGCGTCTCATTGGTGATGCCGCTAAGAACCAGGTCGCCATGAACCCCATTAACACCGTCTTTGATGCCAAGAGGTTGATTGGACGTAGAGTAAGTGATGCCTCTGTTCAGAGTGACATGAAATTGTGGCCTTTTAAGGTTATTGCTGGACCCGGGGATAAGCCAATGATCCAGGTCAATTACAAGGGTGAAGACAAGCAGTTTGCTGCAGAAGAAATCTCTTCTATGGTTCTTACTAAGATGCGTGAAATTGCTGAAGCTTATCTTGGCTCTACAATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTTAATGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTGTTATTGCTGGTCTTAATGTGATGCGTATTATCAATGAGCCTACTGCTGCGGCCATTGCTTATGGTCTTGACAAGAAGGCTACCAGTGTTGGCGAGAAGAATGTGTTGATTTTTGATCTTGGTGGTGGAACTTTTGATGTCTCTTTACTGACTATTGAAGAGGGTATCTTCGAGGTGAAAGCCACAGCTGGGGACACCCATCTTGGAGGTGAGGATTTTGATAACAGGATGGTCAACCATTTTGTTCAGGAGTTCAAGAGAAAGAACAAGAAGGACATTAGTGGCAACCCCAGAGCACTAAGGAGGTTGAGGACTGCTTGTGAGAGGGCTAAGAGGACTCTATCATCAACTGCCCAGACCACCATTGAAATCGATTCTCTGTATGAGGGAATTGATTTCTACTCCACCGTTACCCGTGCCAGATTTGAGGAGCTCAACATGGATCTCTTTAGGAAGTGTATGGAACCAGTTGAGAAGTGTTTAAGAGATGCTAAAATGGACAAGATGTCTGTCCATGATGTTGTGCTTGTTGGTGGTTCCACTAGAATTCCCAAGGTTCAACAACTTCTACAGGATTTCTTTAATGGGAAGGAGCTCTGCAAGAGCATTAATCCTGATGAGGCTGTGGCATATGGTGCTGCTGTTCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGATGGTTCAAGAGGCGGAGAAGTACAAGTCTGAAGATGAAGAGCACAAGAAGAAGGTAGAGGCAAAGAATGCACTGGAGAACTATGCTTACAACATGAGGAATACTATAAAGGATGAGAAGATTGGAGGAAAACTTGACCCAGCTGACAAGAAGAAGATTGAAGATGCCATTGAGCAGGCCATCCAGTGGCTAGACAACAATCAACTTGGAGAGGCAGACGAGTTTGAAGACAAAATGAAGGAATTGGAGAGCATCTGCAACCCTATAATCGCCAAGATGTACCAAGGTGGTGCTGGTCCGGACGTTGATGGTGCAATGGATGATGATGCTCCTGCTGGCGGAAGTGGTGCTGGCCCCAAGATTGAGGAAGTGGACTAA 1557 0.4605 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRVSDASVQSDMKLWPFKVIAGPGDKPMIQVNYKGEDKQFAAEEISSMVLTKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTVTRARFEELNMDLFRKCMEPVEKCLRDAKMDKMSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIGGKLDPADKKKIEDAIEQAIQWLDNNQLGEADEFEDKMKELESICNPIIAKMYQGGAGPDVDGAMDDDAPAGGSGAGPKIEEVD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi194g00003 518 FunFam Heat shock 70 kDa protein 71 126 - -
Gabi194g00003 518 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gabi194g00003 518 Gene3D - 192 366 - -
Gabi194g00003 518 FunFam Heat shock 70 kDa protein 409 518 - -
Gabi194g00003 518 Coils Coil 391 411 - -
Gabi194g00003 518 MobiDBLite consensus disorder prediction 489 518 - -
Gabi194g00003 518 PANTHER HEAT SHOCK PROTEIN 70KDA 9 388 IPR013126 GO:0005524|GO:0140662
Gabi194g00003 518 Gene3D - 386 489 IPR029048 -
Gabi194g00003 518 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 413 494 IPR029048 -
Gabi194g00003 518 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Gabi194g00003 518 FunFam Heat shock protein 70 10 196 - -
Gabi194g00003 518 Pfam Hsp70 protein 391 488 IPR013126 GO:0005524|GO:0140662
Gabi194g00003 518 Pfam Hsp70 protein 9 389 IPR013126 GO:0005524|GO:0140662
Gabi194g00003 518 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi194g00003 518 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gabi194g00003 518 Gene3D - 10 384 - -
Gabi194g00003 518 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Gabi194g00003 518 FunFam Heat shock 70 kDa protein 197 260 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 337 353 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 369 389 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 58 66 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 36 48 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 146 166 - -
Gabi194g00003 518 PRINTS 70kDa heat shock protein signature 209 219 - -
Gabi194g00003 518 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Gabi194g00003 518 Gene3D - 71 126 - -
Gabi194g00003 518 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Gabi194g00003 518 FunFam Heat shock 70 kDa 235 318 - -
Gabi194g00003 518 Gene3D Actin; Chain A, domain 4 235 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi194g00003 Gabi-Chr194 23832 26845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi194g00003 1 518 Calmodulin-binding Proteins AT5G02500 91.555 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi194g00003 K03283 - csin:114277576 860.522