Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1948g00002 ATGTTGTTGTCATCCACTTGCATGTATTCTCTACCAAGTACATTCTCCACTAGCCCAGCTGTAAAGATTAAGGATCTGGTGCTGAAGCTTTCAGGGAAGAAAATCAAAGATGGCAACCCCAAGAGCATCAAGTATGACACCGTTTCTGAAGAGGTTACATACGGCTACATTGGTGGTGGAAGCGCAAGTTCAACCCCTGCTTTGGACTACAGAAACCCCAATCAATCCCCAATTGGTAACACCACCCCTGGAGGGCGTCAACCTCAACCACCAGCTGGTAGTGTAGTGATGGTGGACATGACTGGATCCAACAAGTGGATAGCAAAGATGGAGCCAGATGCTCACATCACCGTTGTGTCTATTCCTACTGGGGGCAATGATCTCAAAAGGATTCGCTTCTGGATCAGGGAGCTTCAGAATATCCAGAATTTAAATCAACATGTTTTCAACACTCCTGCAAGGTCGGATGATGATGAGAACTCGGGAGAATCTGAACAAGATATCCCAATGGCTTCAATGCTGAACATGGATTCGACTTCGGGGAATTTCCATGCACCCGCTGGGAATATGGGGTATTTCCATGGTGGGATATCAAGGGCTAACAACCCTACTGACAATGAAATGGATATAAAATGCAGCCGGGAAATTTTTGATGCAGATGCAGCCAAGGATTGGTGGCTGCGCAACAGGGTTCGAGTTCATGCTCAGTATATGTGA 717 0.4644 MLLSSTCMYSLPSTFSTSPAVKIKDLVLKLSGKKIKDGNPKSIKYDTVSEEVTYGYIGGGSASSTPALDYRNPNQSPIGNTTPGGRQPQPPAGSVVMVDMTGSNKWIAKMEPDAHITVVSIPTGGNDLKRIRFWIRELQNIQNLNQHVFNTPARSDDDENSGESEQDIPMASMLNMDSTSGNFHAPAGNMGYFHGGISRANNPTDNEMDIKCSREIFDADAAKDWWLRNRVRVHAQYM 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1948g00002 238 PANTHER PROTEIN BREVIS RADIX-LIKE 1 21 184 IPR044532 -
Gabi1948g00002 238 Pfam Transcription factor regulating root and shoot growth via Pin3 210 237 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1948g00002 Gabi-Chr1948 15731 17207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1948g00002 21 238 Major Intrinsic Protein MIP AT1G31880 29.773 2.96e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1948g00002 - - cave:132175194 129.028