Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1945g00002 ATGAGTTCTAGCTTTGTCACCAAATCACCACCACCACCGTCACCGTCCTCTTCCTCATCGCCGCTGAACTCCTCCACTGAGTCCCTTGATGGCTTGAAGTTTGGCCAAAAAATATATTTTGAGGATGTGAGTGTGGCAACTCAGGCCAAACCCAATAATGGGGTCTCTTCTTCTTCTTCTTCCTTAGGGTCAAAGAAGGGAAGGGGTGGTGTGGTTAATGTGGCTCACCCTCCTAGGTGTCAGGTGGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTTGCATGCACTCCAAATCCCCTACTGTCATTGTCAATGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGCGATTAGCTGGTCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCTTAGTAACCTCTCGTTATGCCAGACTTTCTTCACCTATTGTTGATAACAATGGTTCTGGTGATGGCTTTCTAATGAAATTTGCTTCATACCCAAAGCTTACTCTGAGAAATGCATTGCCAACACCAACATCTTCTGAACCAGTTCCTGGGAATCAAACTGAAACACTTACTTGGCTGGCCAATTCAGAGACACCATCTGAATTTTTCCTGCAAAGTTCAGTGGGTGGAACAAGCATCACTGGTCCAAGATATCCTTCAGTGGAAAGTTACACTGCAGTCACAGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACTCAGCACCACCAAGTGTTGAGCTGAACAACTTGTTGAATTTCAATGGTACACCCATGACACAACTTGCTGCATCATCTCAAGTTGCAGCCATCCATCAGCATCCAAATGCCTCATGGTATTTCAAGGGCATTGATTCTGGTAATTGTTCACCTGAGGTTGTCCCTTATCTCGGTCCGGGTCAAATTTCCCAGCCTCTTCATAGCCATCTTTCTGGGGAGCTTGATGTGTCACAAGGTAGGAGGCAATTTTACATGGATCTAGGGCAGTCCAGGAACTGTGAGTCTTCTCACTGGTCACTTTAA 1113 0.4555 MSSSFVTKSPPPPSPSSSSSPLNSSTESLDGLKFGQKIYFEDVSVATQAKPNNGVSSSSSSLGSKKGRGGVVNVAHPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPTVIVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLVTSRYARLSSPIVDNNGSGDGFLMKFASYPKLTLRNALPTPTSSEPVPGNQTETLTWLANSETPSEFFLQSSVGGTSITGPRYPSVESYTAVTDSNCALSLLSNQTWGSRNSAPPSVELNNLLNFNGTPMTQLAASSQVAAIHQHPNASWYFKGIDSGNCSPEVVPYLGPGQISQPLHSHLSGELDVSQGRRQFYMDLGQSRNCESSHWSL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1945g00002 370 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Gabi1945g00002 370 FunFam Squamosa promoter-binding-like protein 14 72 141 - -
Gabi1945g00002 370 MobiDBLite consensus disorder prediction 1 29 - -
Gabi1945g00002 370 MobiDBLite consensus disorder prediction 143 162 - -
Gabi1945g00002 370 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 317 IPR044817 GO:0003677
Gabi1945g00002 370 MobiDBLite consensus disorder prediction 50 66 - -
Gabi1945g00002 370 Pfam SBP domain 80 153 IPR004333 GO:0003677
Gabi1945g00002 370 MobiDBLite consensus disorder prediction 50 71 - -
Gabi1945g00002 370 SUPERFAMILY SBT domain 78 159 IPR036893 GO:0003677|GO:0005634
Gabi1945g00002 370 Gene3D - 71 141 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1945g00002 Gabi-Chr1945 49191 54041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1945g00002 32 370 SBP-box Gene Family AT2G42200 40.659 1.21e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi1945g00002 SBP 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1945g00002 - - gmx:100807165 506.138