Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1945g00001 ATGACTCATATTTCGTGTTCAAGGAAAGAGTTCAAACCCACTGATGATGAACTCATCCAATTGTTTCTTTACAATAAGGTCAATGGGAAACCATTGCCAACTGATGTTTCGATTCTTGAATATGACTTATTTGGTGAAAAGAACCCTTGGGAGATTTGGGAAGCCTTTGGAAGTTCCAACTCTTACGGTGGAACTGATCTTTACTTCTTAACCACTTTAAAGAAAAAGTTTCCCACTAGCTCACGCTTTGTTCGCACCATTGGATGTGGTTCATGGGAAGCTGAAGACAGTGGAAAAAATATTATGGCCAGTGGCACGATGCAATGTATTGGAACAAGGAGACGTTTACGATTTGAAAAGAGTGGCACCAACCATGATGGTGCTTGGATCTTGTATGAATATAGAATTGATTCATCCTTGTTAGAAAATCCATTAGCCGACAATTATGTTTTATGCAGATTTAGAAAGAATCTAAGACATGATCTTCACAAAAAACAAGGTGTGAAAAGAACTAGACAAGAAGACATCGCTGTAACCCAACCGAGGAAGAGAGTTGTTCTTGGACTCGAAGCTTCCACCGTATATGAAGATAAGAATGTTAGTTCAGTGGAAGACATTCATCACGAACCAAGAAACAAAGTTGATTGTGGAGACAAGAGGATGAAGCTGGAGAGTAGAACTGAGTTCGTATATAAGAAACAAGAAGATGATGATCTCACCATGACTTGGCCAGAGTTATTTTCGTTGCAGATGAGAGAGGCTAATGGATTCTTAGTCCAAGAAGAAGAGATCCAAATGCTTCCCAATACATTTTACCATGAATTTTTATTGGAGAGGTTATCGCCATCCTACTTATGA 858 0.3893 MTHISCSRKEFKPTDDELIQLFLYNKVNGKPLPTDVSILEYDLFGEKNPWEIWEAFGSSNSYGGTDLYFLTTLKKKFPTSSRFVRTIGCGSWEAEDSGKNIMASGTMQCIGTRRRLRFEKSGTNHDGAWILYEYRIDSSLLENPLADNYVLCRFRKNLRHDLHKKQGVKRTRQEDIAVTQPRKRVVLGLEASTVYEDKNVSSVEDIHHEPRNKVDCGDKRMKLESRTEFVYKKQEDDDLTMTWPELFSLQMREANGFLVQEEEIQMLPNTFYHEFLLERLSPSYL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1945g00001 285 PANTHER NAC TRANSCRIPTION FACTOR 56 10 196 - -
Gabi1945g00001 285 Pfam No apical meristem (NAM) protein 10 136 IPR003441 GO:0003677|GO:0006355
Gabi1945g00001 285 ProSiteProfiles NAC domain profile. 5 157 IPR003441 GO:0003677|GO:0006355
Gabi1945g00001 285 SUPERFAMILY NAC domain 11 155 IPR036093 GO:0003677|GO:0006355
Gabi1945g00001 285 Gene3D NAC domain 14 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1945g00001 Gabi-Chr1945 3135 4422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1945g00001 11 176 NAC Transcription Factor Family AT1G77450 33.333 5.64e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1945g00001 NAM 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1945g00001 - - mtr:11433340 265.003