Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00025 ATGGCCCAGCAGTCATCTAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACTCAAACGACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCACAAGACTTGACCAATCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGCAAAAATTGGGACACAAGAGTTGCTGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGTTTGAATGAACTTATTGCTTCTGTTGTATCAAAAATTTCTGAGGATGGGATATCTTGTAGTGTTGAGGATCTATGTGCATGGCTTTCTTTACAATCGAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTCGGAGCTTTATTAGCATCAGGAGGACAGGAATATGATATTGTAAGTGATAATATAAAGAGCCCAAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTTCGACGCCGTTTAGGCTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGACAATCATCTCAATGGAGTAGATCATAGAGTTTTTACATCTTGTTCTGTACATAATATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAGGTAAACTCAAAGGACCAGACAAAAGGTTGGTGTGAAGAGGGAAGCACCGAGGCATCAGGTGCTCAAAATTTGACTTCAAAAGGCACGAGTCCTGATTCAGTAAATTACAGCAAGGCATTCATGGATGCTAATCAGGAGGAAGATGGCTTTGAGCATGATGGGGATGGACAATGGCCTTTCTACACTTCTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCATTGAGAGAGATTTTAACGCATCAAGGCGCTTCTGCTGGAGTGTTTAAACGTGACTCACGCTTTGGTGGTGCCTTGTTTGTTGAATTAGAAGACAAAAGTATATCAAATATGTTGAAGAGAGAGAGGGAAATTGATTTAAATATCCAAGTTTCAGCTGATGAGTTTGAGTCAAACTTGAAGAAGCCAAAACTTGAGGATGTTTCATATTCGACCCCTATGGATAGCGTGATGACTTGCAGCAATCAGTGTGATATTGAAATCAGCATTAGTTCTGAAACCCAGGGATGCAATTTACCTTTGGATTATGGAAATGGGCAATTTAATGGTAATTCTGTTGACATGGATCTGGAATCTTTCTCTGACGGTGTACATGATGCATGCAAGGAACCTGCTAATGTGGCAGAGCAGAAGGGTTATTCTGAAGACACTAAGATTCCCTCTGGAAATCTTAATGTGCTGAGAAATCTTCCGCAGAATTGTGAGCTGATGAACATGGTTAAAGTAGCTAGAAGTTCCTGGCTTCGAAACTTTGAATTTCTTCAAGATTGTGTGATACGTTTTTTGTGTGTGTTGTCACTTGACCGCTTTGGAGATTACGTGTCTGATCAGGTTGTTGCTCCAGTACGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCAGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATAAAATATTTGGTTGCTGTGCGGCAGGAGATGCTCTCTGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGATCCAGATGATGATGTCAGGGCAGTAGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCCAGGTCAAACATTGCACTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACAAGCAGCGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGAGATGGTACCGAAGATGTATAAAGTTTTTAAATTGGGAGACACGGAAATGGAAAATGGAGTTGGTGGTGGTGGTGATTATGGAGAAGAAAATCCTTTTGTGCTTTCTACATTGGCTCCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATAAGGACTCTGGAGAGGCTACTTGAAGCTGTATATAAGAGAAGCTTGTCTGAGCTGTGTAGTGCTTCTTTTTGGCCCTCTTTTATATTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTCCTGTGGAGGACTTGGAGACAGCTGCAAGGTCTTATATGACTTCTTGGATAGAACTTGCATCTACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTATTTGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAGATGAGAGCCGTGAAGATTGAAAATGAATATGGTGGGGATCTTGGTCTTGATTCTACAAAGGGAATTATTCCTCAAGATAAAAATGGAGATATTCCTATAAATTCGGTTAAAATAGTTGTTGGTGCTGATGTAGACTCGTCTGTAACTCATACTCGGGTGGTCACAGCAACTGCATTGGGAATTTTTGCTTCTAAGCTGCCAGAGGGTTCTTTGAAATTTGTGATTAATCCGCTTTGGAGATCTCTAACCTCTTCGTCTGGTGTCCAGCGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTTAAGGAGATTAAGCATTGTAATTCATCCAAAAACCTTGATGGCATTCCTATTGCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCTTTCCCAACAAAAGATTCACTTATTCCATATACTGAGCTTTCAAGAACTTATTCAAAGATGCGTAGTGAGGCTGGTCAATTGTTAAATGCTGTCAAGTCTTCTGGTATATTTAATGAGTTGTTGAGAACTACCAAAATTGAGTTGGATAGCTTGAGTGTGGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCATTATGTAATGATAGTTCTGCAAATGAATCCTTGGGAAAGAACACAATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACTACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATATTACGGTCTCATCTTCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGTCTCACCCCAATCATTTTGCCTTTGATGGCTTCGATCAAACGAGAACAGGAGGAAATCCTGCAAATGATGTCAGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTACACGTAGGCCTTGCCCTAATGATAAATTAATTAAGAATATATGTAGTTTGACTTGCACGGATCCCTCTGAGACCCCTCAAGCTAAATTAATCTGCTCCATGGAGAGTATTGATGACCAAGGTCTCCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGATCAAAGGTTGAGGGATTTATAAGTAGACGTGGATCTGAGCTATCATTGAGGCTTCTGTGCGAGAAATTTGGTGCTTTGTTATTTGATAAACTTCCTAAGCTGTGGGATTGCCTGACTGAGGTGCTAAAGCCAAGCTCATCTGAATCTCTTCTTGTCACTAATGAAAAGCAAGTTACTGTGGCTATTGAGTCTGTCAGTGATCCTCAGATCTTGATTAACAACATCCAGGTGGTACGATCTGTTGCTCCCCTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATTTTCGAATGTGTTCAACATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGGGGGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCTTCATCAGTTCATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGTCTGGGTGTTGAGTTGGTCCCTTATGCTCCTCTGTTGGTGGTTCCACTTCTAAGGTGCATGAGTGATTGTGATCAGTCTGTCAGAAAGAGTGTGACCCATAGTTTTGCTGCCCTTGTACCTTTACTTCCTTTAGCTCGAGGCCTTCCTCAACCGATTGGATTAGGAGAAGGTATATCCAGAAATGCAGAAGATTTGCATTTTTTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGGGCACTGAATTAAAAGTAACACTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAGCTTCAATTGGGAACGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACACTAGTTGGACACTGGGCCTTTGAGATAGAAAAATATATTGATGTTTCAGTTATATCTAGTCTTCAATATGTGGGTTCTGCTCAGGAGCGAATGTTTCTTCGAGATCATTTTTGCAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGCTGTTGAATTACTGCATTTTGGATGAAGGACATATAATCAAGAATGCCAAGTCTAAAGTTACGCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTAATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTCTTTGATTTTTTGATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCCACATACGGAAAACCGCTATTAGCTTCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTTTTGTCTGATCTTCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGAACAGTTTTCTGGTTCTCCTGTAAAAAAAGAAATGTCATCTATGGTAACAACAAATGAGTCAGTTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTTCAGGCACTTCAATACTTGCTAAAACTCTGTAGTCATCCCTTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTCTCTACCGCCCTCTCAGGACTGTTGCCTGTTGACTCTGACATCATTTCTGAACTTCACAAACTCCATCACTCCCCAAAGTTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTTGGGTTCTGAGGGTGCTGTAAGCATTGGGCAACACAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATCGAAAGAGATTTATTTCAGACCCACATGAAAAATGTCACGTATTTGCGGCTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGATATTGTCAAAGCTTTCAATTCTGACCCTACCATTGATGTCTTACTGCTTACAACGCATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCATGATTGGAATCCTATGCGAGATCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGCCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATTCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCTTCAGCAGAAATCTCCAAGAAGGGGTCTTCTGTTGTGAAGAGTTCAGAGAACAACTCTGATGGAGACACTAAATTAGTAGGCAGTGGGAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAGTATACAGAGGAGTACAATCTGAGTCAATTCTTGGCAAAGCTTAATGGCTAA 6150 0.4125 MAQQSSRLQRLLTLLDTGSTQTTRLTAARQIGDIAKSHPQDLTNLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLNELIASVVSKISEDGISCSVEDLCAWLSLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIVSDNIKSPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAHKSDNHLNGVDHRVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKVNSKDQTKGWCEEGSTEASGAQNLTSKGTSPDSVNYSKAFMDANQEEDGFEHDGDGQWPFYTSVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKRDSRFGGALFVELEDKSISNMLKREREIDLNIQVSADEFESNLKKPKLEDVSYSTPMDSVMTCSNQCDIEISISSETQGCNLPLDYGNGQFNGNSVDMDLESFSDGVHDACKEPANVAEQKGYSEDTKIPSGNLNVLRNLPQNCELMNMVKVARSSWLRNFEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALPGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMVPKMYKVFKLGDTEMENGVGGGGDYGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAVYKRSLSELCSASFWPSFIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCPVEDLETAARSYMTSWIELASTPFGSALDASKMYLPVAFPRKSQFRAAAKMRAVKIENEYGGDLGLDSTKGIIPQDKNGDIPINSVKIVVGADVDSSVTHTRVVTATALGIFASKLPEGSLKFVINPLWRSLTSSSGVQRQVASMVLISWFKEIKHCNSSKNLDGIPIALKDWLLDLLACSDPAFPTKDSLIPYTELSRTYSKMRSEAGQLLNAVKSSGIFNELLRTTKIELDSLSVDDAIGFASKIPALCNDSSANESLGKNTMDDIESSKQRLLTTSGYLKCVQSNLHITVSSSVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMMSAEALAELMYHCVTRRPCPNDKLIKNICSLTCTDPSETPQAKLICSMESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFISRRGSELSLRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESLLVTNEKQVTVAIESVSDPQILINNIQVVRSVAPLLNEELKPKLLTLLPCIFECVQHSHVAVRLAASRCITSMARSMTVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRKSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRASIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMFLRDHFCKHNVIITSYDVVRKDIDYLGQLLLNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLASRDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSPVKKEMSSMVTTNESVAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSTALSGLLPVDSDIISELHKLHHSPKLVALHEILEECGIGVDALGSEGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASAEISKKGSSVVKSSENNSDGDTKLVGSGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00025 2049 Gene3D - 1425 1684 IPR038718 -
Gabi1943g00025 2049 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2048 IPR044972 GO:0003677|GO:0016887|GO:0017025
Gabi1943g00025 2049 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Gabi1943g00025 2049 FunFam TATA-binding protein-associated factor BTAF1 508 688 - -
Gabi1943g00025 2049 Coils Coil 2044 2049 - -
Gabi1943g00025 2049 Gene3D - 1695 2011 IPR027417 -
Gabi1943g00025 2049 MobiDBLite consensus disorder prediction 244 270 - -
Gabi1943g00025 2049 FunFam TATA-binding protein-associated factor BTAF1 1200 1411 - -
Gabi1943g00025 2049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1803 1977 IPR001650 -
Gabi1943g00025 2049 SMART ultradead3 1449 1646 IPR014001 -
Gabi1943g00025 2049 SUPERFAMILY ARM repeat 6 1492 IPR016024 -
Gabi1943g00025 2049 FunFam TATA-binding protein-associated factor 172 1695 2012 - -
Gabi1943g00025 2049 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1423 1684 - -
Gabi1943g00025 2049 MobiDBLite consensus disorder prediction 251 270 - -
Gabi1943g00025 2049 Pfam Helicase conserved C-terminal domain 1831 1931 IPR001650 -
Gabi1943g00025 2049 CDD DEXHc_Mot1 1453 1685 IPR044078 GO:0005524
Gabi1943g00025 2049 Gene3D - 4 98 IPR011989 -
Gabi1943g00025 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1434 1685 IPR027417 -
Gabi1943g00025 2049 Gene3D - 508 687 IPR011989 -
Gabi1943g00025 2049 Gene3D - 1087 1411 IPR011989 -
Gabi1943g00025 2049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1465 1635 IPR014001 -
Gabi1943g00025 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1686 1987 IPR027417 -
Gabi1943g00025 2049 CDD SF2_C_SNF 1800 1942 - -
Gabi1943g00025 2049 Pfam SNF2-related domain 1471 1767 IPR000330 GO:0005524|GO:0140658
Gabi1943g00025 2049 Pfam Domain of unknown function (DUF3535) 782 1236 IPR022707 -
Gabi1943g00025 2049 SMART helicmild6 1845 1931 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00025 Gabi-Chr1943 169715 192618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00025 1448 1986 RAD5 or RAD16-like Gene Family AT1G02670 27.320 3.15e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1943g00025 DUF3535 5.3e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00025 K15192 - gmx:100777977 3545.75