Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00024 ATGGCCCAGCAGTCATCTAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACTCAAACGACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCACAAGACTTGACCAATCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGCAAAAATTGGGACACAAGAGTTGCTGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGTTTGAATGAACTTATTGCTTCTGTTGTATCAAAAATTTCTGAGGATGGGATATCTTGTAGTGTTGAGGATCTATGTGCATGGCTTTCTTTACAATCGAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTCGGAGCTTTATTAGCATCAGGAGGACAGGAATATGATATTGTAAGTGATAATATAAAGAGCCCAAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTTCGACGCCGTTTAGGCTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGACAATCATCTCAATGGAGTAGATCATAGAGTTTTTACATCTTGTTCTGTACATAATATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAGGTAAACTCAAAGGACCAGACAAAAGGTTGGTGTGAAGAGGGAAGCACCGAGGCATCAGGTGCTCAAAATTTGACTTCAAAAGGCACGAGTCCTGATTCAGTAAATTACAGCAAGGAGGAAGATGGCTTTGAGCATGATGGGGATGGACAATGGCCTTTCTACACTTCTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCATTGAGAGAGATTTTAACGCATCAAGGCGCTTCTGCTGGAGTGTTTAAACGTGACTCACGCTTTGGTGGTGCCTTGTTTGTTGAATTAGAAGACAAAAGTATATCAAATATGTTGAAGAGAGAGAGGGAAATTGATTTAAATATCCAAGTTTCAGCTGATGAGTTTGAGTCAAACTTGAAGAAGCCAAAACTTGAGGATGTTTCATATTCGACCCCTATGGATAGCGTGATGACTTGCAGCAATCAGTGTGATATTGAAATCAGCATTAGTTCTGAAACCCAGGGATGCAATTTACCTTTGGATTATGGAAATGGGCAATTTAATGGTAATTCTGTTGACATGGATCTGGAATCTTTCTCTGACGGTGTACATGATGCATGCAAGGAACCTGCTAATGTGGCAGAGCAGAAGGGTTATTCTGAAGACACTAAGATTCCCTCTGGAAATCTTAATGTGCTGAGAAATCTTCCGCAGAATTGTGAGCTGATGAACATGGTTAAAGTAGCTAGAAGTTCCTGGCTTCGAAACTTTGAATTTCTTCAAGATTGTGTGATACGTTTTTTGTGTGTGTTGTCACTTGACCGCTTTGGAGATTACGTGTCTGATCAGGTTGTTGCTCCAGTACGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCAGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATAAAATATTTGGTTGCTGTGCGGCAGGAGATGCTCTCTGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGATCCAGATGATGATGTCAGGGCAGTAGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCCAGGTCAAACATTGCACTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACAAGCAGCGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGAGATGGTACCGAAGATGTATAAAGTTTTTAAATTGGGAGACACGGAAATGGAAAATGGAGTTGGTGGTGGTGGTGATTATGGAGAAGAAAATCCTTTTGTGCTTTCTACATTGGCTCCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATAAGGACTCTGGAGAGGCTACTTGAAGCTGTATATAAGAGAAGCTTGTCTGAGCTGTGTAGTGCTTCTTTTTGGCCCTCTTTTATATTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTCCTGTGGAGGACTTGGAGACAGCTGCAAGGTCTTATATGACTTCTTGGATAGAACTTGCATCTACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTATTTGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAGATGAGAGCCGTGAAGATTGAAAATGAATATGGTGGGGATCTTGGTCTTGATTCTACAAAGGGAATTATTCCTCAAGATAAAAATGGAGATATTCCTATAAATTCGGTTAAAATAGTTGTTGGTGCTGATGTAGACTCGTCTGTAACTCATACTCGGGTGGTCACAGCAACTGCATTGGGAATTTTTGCTTCTAAGCTGCCAGAGGGTTCTTTGAAATTTGTGATTAATCCGCTTTGGAGATCTCTAACCTCTTCGTCTGGTGTCCAGCGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTTAAGGAGATTAAGCATTGTAATTCATCCAAAAACCTTGATGGCATTCCTATTGCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCTTTCCCAACAAAAGATTCACTTATTCCATATACTGAGCTTTCAAGAACTTATTCAAAGATGCGTAGTGAGGCTGGTCAATTGTTAAATGCTGTCAAGTCTTCTGGTATATTTAATGAGTTGTTGAGAACTACCAAAATTGAGTTGGATAGCTTGAGTGTGGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCATTATGTAATGATAGTTCTGCAAATGAATCCTTGGGAAAGAACACAATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACTACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATATTACGGTCTCATCTTCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGTCTCACCCCAATCATTTTGCCTTTGATGGCTTCGATCAAACGAGAACAGGAGGAAATCCTGCAAATGATGTCAGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTACACGTAGGCCTTGCCCTAATGATAAATTAATTAAGAATATATGTAGTTTGACTTGCACGGATCCCTCTGAGACCCCTCAAGCTAAATTAATCTGCTCCATGGAGAGTATTGATGACCAAGGTCTCCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGATCAAAGGTTGAGGGATTTATAAGTAGACGTGGATCTGAGCTATCATTGAGGCTTCTGTGCGAGAAATTTGGTGCTTTGTTATTTGATAAACTTCCTAAGCTGTGGGATTGCCTGACTGAGGTGCTAAAGCCAAGCTCATCTGAATCTCTTCTTGTCACTAATGAAAAGCAAGTTACTGTGGCTATTGAGTCTGTCAGTGATCCTCAGATCTTGATTAACAACATCCAGGTGGTACGATCTGTTGCTCCCCTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATTTTCGAATGTGTTCAACATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGGGGGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCTTCATCAGTTCATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGTCTGGGTGTTGAGTTGGTCCCTTATGCTCCTCTGTTGGTGGTTCCACTTCTAAGGTGCATGAGTGATTGTGATCAGTCTGTCAGAAAGAGTGTGACCCATAGTTTTGCTGCCCTTGTACCTTTACTTCCTTTAGCTCGAGGCCTTCCTCAACCGATTGGATTAGGAGAAGGTATATCCAGAAATGCAGAAGATTTGCATTTTTTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGGGCACTGAATTAAAAGTAACACTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAGCTTCAATTGGGAACGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACACTAGTTGGACACTGGGCCTTTGAGATAGAAAAATATATTGATGTTTCAGTTATATCTAGTCTTCAATATGTGGGTTCTGCTCAGGAGCGAATGTTTCTTCGAGATCATTTTTGCAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGCTGTTGAATTACTGCATTTTGGATGAAGGACATATAATCAAGAATGCCAAGTCTAAAGTTACGCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTAATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTCTTTGATTTTTTGATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCCACATACGGAAAACCGCTATTAGCTTCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTTTTGTCTGATCTTCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGAACAGTTTTCTGGTTCTCCTGTAAAAAAAGAAATGTCATCTATGGTAACAACAAATGAGTCAGTTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTTCAGGCACTTCAATACTTGCTAAAACTCTGTAGTCATCCCTTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTCTCTACCGCCCTCTCAGGACTGTTGCCTGTTGACTCTGACATCATTTCTGAACTTCACAAACTCCATCACTCCCCAAAGTTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTTGGGTTCTGAGGGTGCTGTAAGCATTGGGCAACACAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATCGAAAGAGATTTATTTCAGACCCACATGAAAAATGTCACGTATTTGCGGCTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGATATTGTCAAAGCTTTCAATTCTGACCCTACCATTGATGTCTTACTGCTTACAACGCATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCATGATTGGAATCCTATGCGAGATCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGCCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATTCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCTTCAGCAGAAATCTCCAAGAAGGGGTCTTCTGTTGTGAAGAGTTCAGAGAACAACTCTGATGGAGACACTAAATTAGTAGGCAGTGGGAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAGTATACAGAGGAGTACAATCTGAGTCAATTCTTGGCAAAGCTTAATGGCTAA 6129 0.4125 MAQQSSRLQRLLTLLDTGSTQTTRLTAARQIGDIAKSHPQDLTNLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLNELIASVVSKISEDGISCSVEDLCAWLSLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIVSDNIKSPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAHKSDNHLNGVDHRVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKVNSKDQTKGWCEEGSTEASGAQNLTSKGTSPDSVNYSKEEDGFEHDGDGQWPFYTSVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKRDSRFGGALFVELEDKSISNMLKREREIDLNIQVSADEFESNLKKPKLEDVSYSTPMDSVMTCSNQCDIEISISSETQGCNLPLDYGNGQFNGNSVDMDLESFSDGVHDACKEPANVAEQKGYSEDTKIPSGNLNVLRNLPQNCELMNMVKVARSSWLRNFEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALPGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMVPKMYKVFKLGDTEMENGVGGGGDYGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAVYKRSLSELCSASFWPSFIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCPVEDLETAARSYMTSWIELASTPFGSALDASKMYLPVAFPRKSQFRAAAKMRAVKIENEYGGDLGLDSTKGIIPQDKNGDIPINSVKIVVGADVDSSVTHTRVVTATALGIFASKLPEGSLKFVINPLWRSLTSSSGVQRQVASMVLISWFKEIKHCNSSKNLDGIPIALKDWLLDLLACSDPAFPTKDSLIPYTELSRTYSKMRSEAGQLLNAVKSSGIFNELLRTTKIELDSLSVDDAIGFASKIPALCNDSSANESLGKNTMDDIESSKQRLLTTSGYLKCVQSNLHITVSSSVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMMSAEALAELMYHCVTRRPCPNDKLIKNICSLTCTDPSETPQAKLICSMESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFISRRGSELSLRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESLLVTNEKQVTVAIESVSDPQILINNIQVVRSVAPLLNEELKPKLLTLLPCIFECVQHSHVAVRLAASRCITSMARSMTVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRKSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRASIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMFLRDHFCKHNVIITSYDVVRKDIDYLGQLLLNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLASRDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSPVKKEMSSMVTTNESVAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSTALSGLLPVDSDIISELHKLHHSPKLVALHEILEECGIGVDALGSEGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASAEISKKGSSVVKSSENNSDGDTKLVGSGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG 2042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00024 2042 MobiDBLite consensus disorder prediction 251 275 - -
Gabi1943g00024 2042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1679 1980 IPR027417 -
Gabi1943g00024 2042 CDD SF2_C_SNF 1793 1935 - -
Gabi1943g00024 2042 SMART ultradead3 1442 1639 IPR014001 -
Gabi1943g00024 2042 CDD DEXHc_Mot1 1446 1678 IPR044078 GO:0005524
Gabi1943g00024 2042 FunFam TATA-binding protein-associated factor BTAF1 501 681 - -
Gabi1943g00024 2042 Pfam Helicase conserved C-terminal domain 1824 1924 IPR001650 -
Gabi1943g00024 2042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1427 1678 IPR027417 -
Gabi1943g00024 2042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1458 1628 IPR014001 -
Gabi1943g00024 2042 Gene3D - 4 98 IPR011989 -
Gabi1943g00024 2042 Gene3D - 1688 2004 IPR027417 -
Gabi1943g00024 2042 Pfam Domain of unknown function (DUF3535) 775 1229 IPR022707 -
Gabi1943g00024 2042 Gene3D - 1080 1404 IPR011989 -
Gabi1943g00024 2042 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Gabi1943g00024 2042 Pfam SNF2-related domain 1464 1760 IPR000330 GO:0005524|GO:0140658
Gabi1943g00024 2042 FunFam TATA-binding protein-associated factor BTAF1 1193 1404 - -
Gabi1943g00024 2042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1796 1970 IPR001650 -
Gabi1943g00024 2042 Gene3D - 1418 1677 IPR038718 -
Gabi1943g00024 2042 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1416 1677 - -
Gabi1943g00024 2042 FunFam TATA-binding protein-associated factor 172 1688 2005 - -
Gabi1943g00024 2042 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2041 IPR044972 GO:0003677|GO:0016887|GO:0017025
Gabi1943g00024 2042 SMART helicmild6 1838 1924 IPR001650 -
Gabi1943g00024 2042 SUPERFAMILY ARM repeat 6 1485 IPR016024 -
Gabi1943g00024 2042 Gene3D - 501 680 IPR011989 -
Gabi1943g00024 2042 MobiDBLite consensus disorder prediction 244 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00024 Gabi-Chr1943 169715 192618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00024 1441 1979 RAD5 or RAD16-like Gene Family AT1G02670 27.320 3.19e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1943g00024 DUF3535 5.3e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00024 K15192 - gmx:100777977 3530.73