Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00022 ATGGCTTTTCTCCTCAGCCAATCTCTCTTTATTTTTTCGTACTTTCTTCTTTCTTCTCTTCCAATCATAAATGCACTTTCAACTGTTTCCATTTCTGAAACTTCCAACCAAACATTTATTTGTGCCTTACAACAGCCAAACCAACAAGGAAAATCAAATCTTAACTGTACTAGCTTTCCTCCGGGGCTTGTCGTTAATCCCAACATTTCATATTCCGAGATTGTGGGTGGCAATGGATTTGTTTGTGCATTAAGGTCACCATCTAATTCTACTTCCATCATGGGCTGTTGGAGATTCTCTCCCAATGCTGCTACTAATGTTCCATATAAGCGTATCTACCGTGGACCCGTTATACAAGACATTGATGCTGGGAATTCCCATATCTGTGGCCTTGTAAATAGGGAAAATGGCCTCGACCTTGAGTGTTGGCAATGGCCTGGCTTCAATTCAAGCATGGGAGGGAAGAGGAACATGTCAAGCATTGCCGTGGGAGAGAATTTCTTATGTGGCTTATCAGAAACTGGGAACGTTACTTGCATGGGGAATAATACTAGAGTTGTTGGGCATGAGCCTAGTGGAAATTACTCTCTTGTTGCAGCTGGGTTTTGGCATGCTTGTGCTATTTCTCTTGATGGTAGCTTGGATTGCTGGGGAAACGTGGTGGGTGATAAACCACAAGGGAGTTTCGTTTCTTTGGCGTTGGGAGAGGATCGAAGTTGTGCACTTGGTTATAATGGAATGGTTGCTTGTTGGGGGTCGAATAATTTCAGCATGCCAAATAGATTGCAAGGGACTTTTTTTGAATCAATTGTAGCAAAGCGAAGTGTTTTCTGTGGTGTTGTGTCTTCTAATTATTCTTTGCTTTGTTGGGGTACTGAAATTCTTGAGTCAAATACCAAGGTGTTTGATAATGTCCTCCCAGGACCTTGTAGGAATGAATGTCCATGCGGGCCCTTGTCAGATTCTGCCAATTTCTGTGACTCTCCAGCCATCATTTGCAAGCCTTGTCCACCTGTTTTTCAATCTCCATTGCAGCCGCCGCCACCACCACCACCATCTCCACCCCAAAATGCAGCAGAAAGTGGTTGGAGTACCAAAATGGTGGCATTTCTAGTGGTTGGATGTGTTGGTTGCAGTTCCTTGTTGCTAGTCTTGGCTTTCTTCCTTTACAGGTACTGCAAAGGCAGAGGATGCCGTGTACATGACTCTGGCCGATTGGATGAGCCAGGGACTGAACCAGAAGCTCAAGCTGTCTCTGGAGTTCTGGAGAAGCGGTTGAGCCATGTAATTAGCATGGGAAATGGCAGCCATTTAGAGGAATTTCCCCTGCTAGTACTGGTTGAAGCCACCAACAATTTCTCAGAGGAGAAAAAAATTGGTATGGGTAGCTTTGGTTCAGTGTATCATGCCACACTGGAAGATGGTAAGGAAGTTGCTATAAAAAGAGCTGAGTTCTCGTCCACCTCTCCGTCCTATGCAGTTATGGGTGGCACCAAACGGCAAGAAGACAAAGACAATGCCTTTGTCAATGAGCTTGAATCTCTATCAAGACTCCACCATAAGAACCTAGTCCGGTTATTGGGTTTCTATGAAGACATGAATGAACGCATTTTAGTGTACGATTATATGAACAATGGTAGCTTAAATGATCACCTCCACAAGCTCCAGAGTTCTGCTCTCATGTCATGGCCACTTCGCATCAAGGTAGCTCTAGAAGCAGCAAGAGGTATAGAGTACCTACACAAGTATGCCACTCCACCAATCATTCATCGTGACATAAAGTCAGCTAACATATTATTAGATGCCAAGTGGACGGCCAAAGTTGCTGATTTTGGACTATCATTGATGGGTCCCGAAGATGAGGAGTCACACCTTTCACTTCTAGCAGCTGGTACACTTGGCTATATGGACCCTGAATACTATAGGCTTCAGCATTTGACCTCAAAGAGTGATGTGTACAGCTTTGGCGTGGTTTTGCTAGAACTGCTATCTGGGCACAAAGCCATCCATAAAAATGAGAATGGGGTGCCAAGAAATGTGGTAGATTTTGTGGTACCGTTCATTGTTCAAGATGAAATTCACAGGGTGTTGGACCCAAGAGTGCCACCCCCAACACCATTTGAGATTGAGGCCGTGGCGTTTGTTGGTTATTTGGCAGCAGATTGTGTTAGACTAGAAGGTCGAGATAGACCAACCATGTCTAAAGTTGTAAAGAGTTTGGAAACAGCACTTGCGGCGTGTTTACTCCAACCAATACTGTCGAGGTCCACCACTGCTTCTTCAGACTAG 2289 0.4452 MAFLLSQSLFIFSYFLLSSLPIINALSTVSISETSNQTFICALQQPNQQGKSNLNCTSFPPGLVVNPNISYSEIVGGNGFVCALRSPSNSTSIMGCWRFSPNAATNVPYKRIYRGPVIQDIDAGNSHICGLVNRENGLDLECWQWPGFNSSMGGKRNMSSIAVGENFLCGLSETGNVTCMGNNTRVVGHEPSGNYSLVAAGFWHACAISLDGSLDCWGNVVGDKPQGSFVSLALGEDRSCALGYNGMVACWGSNNFSMPNRLQGTFFESIVAKRSVFCGVVSSNYSLLCWGTEILESNTKVFDNVLPGPCRNECPCGPLSDSANFCDSPAIICKPCPPVFQSPLQPPPPPPPSPPQNAAESGWSTKMVAFLVVGCVGCSSLLLVLAFFLYRYCKGRGCRVHDSGRLDEPGTEPEAQAVSGVLEKRLSHVISMGNGSHLEEFPLLVLVEATNNFSEEKKIGMGSFGSVYHATLEDGKEVAIKRAEFSSTSPSYAVMGGTKRQEDKDNAFVNELESLSRLHHKNLVRLLGFYEDMNERILVYDYMNNGSLNDHLHKLQSSALMSWPLRIKVALEAARGIEYLHKYATPPIIHRDIKSANILLDAKWTAKVADFGLSLMGPEDEESHLSLLAAGTLGYMDPEYYRLQHLTSKSDVYSFGVVLLELLSGHKAIHKNENGVPRNVVDFVVPFIVQDEIHRVLDPRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSKVVKSLETALAACLLQPILSRSTTASSD 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00022 762 Pfam Protein kinase domain 453 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00022 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Gabi1943g00022 762 ProSiteProfiles Protein kinase domain profile. 453 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00022 762 SMART serkin_6 453 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00022 762 SUPERFAMILY Protein kinase-like (PK-like) 429 741 IPR011009 -
Gabi1943g00022 762 FunFam Serine/threonine-protein kinase-like protein CCR4 543 758 - -
Gabi1943g00022 762 SUPERFAMILY RCC1/BLIP-II 109 293 IPR009091 -
Gabi1943g00022 762 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 38 749 IPR044815 GO:0004674
Gabi1943g00022 762 Gene3D Transferase(Phosphotransferase) domain 1 543 748 - -
Gabi1943g00022 762 Gene3D - 221 305 IPR009091 -
Gabi1943g00022 762 Gene3D - 33 220 IPR009091 -
Gabi1943g00022 762 ProSitePatterns Protein kinases ATP-binding region signature. 459 481 IPR017441 GO:0005524
Gabi1943g00022 762 CDD STKc_IRAK 459 741 - -
Gabi1943g00022 762 Gene3D Phosphorylase Kinase; domain 1 427 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00022 Gabi-Chr1943 152219 154870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00022 25 758 Receptor kinase-like Gene Family AT5G47850 52.387 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gabi1943g00022 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00022 - - pvu:PHAVU_011G003100g 1090.49