Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00020 ATGGCCAAGGGTACCCGTCTCTTTCACTTTTTCCAGTTCTTGGCAATGCTGTTATTCACTTCCTACTCTATTTTCCTGCCTTGCGTGTCTCTAACCTTGGAAAGCCAAGCTCTTCTTCAGTTCAAGAACCATTTAAAGGAACCCTTGAATTCTTTGGGTACGTGGAATGAATCAGACTCTCCATGTGAGTTCTATGGAATTACATGTGATCCAGTTTCTGGGAAAGTCACAGAAATGTCACTGGACAATAAGTCCCTCTCTGGTGACATATCTCCATCACTATCAGTTCTGCAGAGCCTGCAAGTTCTGTCAATACCATCCAATTTAATTTCTGGAAAGCTTCCATCAGAAATAAGTACTTGTACCAACCTCAGAGTCTTGAATCTAACAGGAAATCTGTTGGTTGGACCAATCCCAGACTTGTCTGGACTGAGAAACCTGCAGGTTCTTGACCTTTCAGCAAACTACTTTAGTGGCAGCATCCCCAGCTGGTTGGGGAATCTAACTGGACTGGTTTCACTGGGTCTTGGGGAAAATGAATACACTGAGGGTGAGATTCCAGAGACACTTGGAAATCTGAAGAACTTGACCTGGCTCTATCTCGGTGGTTCCCATTTGATAGGAGAGATTCCAGAATCAATATATGAAATGAAGGCATTGGAGACGCTGGATATTTCAAGAAACAAGATCTCTGGCAAAATATCCAGATCAATTTCCAAGTTAGAAAACCTTTACAAGATTGAGCTCTTCGCAAATAATTTGACAGGAGAAGTCCCAGCTGAGCTTGCAAACCTCACCAATCTGCAGGAGATTGATCTTTCTGCAAACAGCATGTATGGTAGGTTGCCAGAAGAAATAGGTAATATGAAGAAATTGGTTGTTTTTCAACTATATGAAAACAGCTTTTCTGGAGAACTTCCTTCTGGATTTGGGGATATGCAACATCTCATTGGGTTCTCAATATACGGAAACAGCTTCACTGGGATGATTCCAGAAAATTTTGGCCGATTTTCGCCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAGCAGGAAGTTGAGACTTTTGCTTGCATTGCAAAACAACTTCTCTGGAAATTTTCCCAAGTCTTATGTTGCATGCAAATCTCTAGAGAGATTTAGGATCAGTAGGAACCACTTATCTGGGAAAATTCCAGATGATGTTTGGGCACTTCCATATGTAAACATAATTGATTTGGCTTATAATGATTTCACTGGCGAGGTATCTTCAGAAATTGGGTTTTCTACTAGCTTAAGTCAGTTATTTTTGTCAAAGAACAGGTTTTCAGGTAAACTCCCATCAGATCTTGGCAAGCTTCTGAGCTTGGAGAAGCTTTACTTGAGCTACAATAATTTCTCAGGTGAAATACCACCTGAAATGGGATCTCTGAAGCAGTTATCCTCTTTGCACCTAGAAGAGAATTCATTAACTGGATCAATACCAGCTGAACTGGGTCACTGTGCAATGCTTGTGGACTTGAATCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAGTTTCACTTATGAGCTCATTAAACTCTCTCAATATATCTGGAAACAAACTTACAGGTTCTATTCCAGATAATTTAGAAACAATGAAACTAAGCTCGGTGGATTTTTCTGAAAACCAATTTTCTGGAAGAATTCCATCTGGTCTTTTTATCATTGGTGGAGAGAAAGCTTTTCTTGGCAACAAGGGACTGTGTGTTGAGGAAAACTTAAAACCTTCCATGAATTCTGATTTGAAGATTTGTGCCAAAAATAATGGTCAGACAAGGGTCTTTTCTGATACATTTATCTTCCTCCTTTTCATTGCTTCTATCATTGTTGTTATTTTAGCTGGGTTCCTGCTTTTGAGATGTAGAAGCATCAAGCATGGTGCGGAAAAAAACTTACAAGGTCAAAAGGAAGCAAGTCAAAGATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCGGATGAAATATGTAATTTGGATGAAGATAATTTGATAGGGAGTGGTAGTACAGGAAAGGTTTATCGAGTGGAGTTGAGGAAAAACAGTGCCATTGTGGCTGTAAAGCAACTAGGGAAAGTAGATGGTGTGAAGATTTTAGCTGCAGAGATGGAGATTTTGGGGAAAATTAGGCATAGAAATATACTTAAACTTTATGCTTGTTTACTTAAAGGAGGATCCAACCTTTTAGTGTTCGAGTATATGCCAAATGGTAATCTTTTTCAAGTTCTTCACAGACAGATAAAAGATGGGAAGCCTGAATTGGATTGGAACCAGAGGTATAAAATTGCTCTGGGAGCTGCAAAAGGAATTGCCTATTTACACCATGACTGTTCTCCACCTGTTATTCACAGGGATATAAAATCCAGCAACATTTTGCTTGATGAGGATTATGAGCCAAAAATTGCTGATTTTGGCATTGCAAGGTTTGCAGAAAAATCTAATAATCAGTTGAGTTATAGCTGTCTAGCTGGCACATATGGTTATATTGCTCCAGAACTCGCTTATACAATTAACATCAATGAAAAGAGTGATGTTTATAGCTTTGGAGTGGTGCTATTAGAATTAGTGTCTGGCAGAGAACCCATTGAAGAGGATTATGGAGAAGCGAAGGATATTGTTTATTGGGCTTTGACTCATCTCAATGATCGTGAAACTGTTCTCAACATTCTTGATGATAGAGTGGCATCGGAGCATGCTGAAGATATGATAAAAGTCTTGAAGATTGCTATCAAGTGTACCACTAAACTTCCATCTTTGCGCCCTACCATGAGGGAGGTTGTCAAAATGCTTTTTGGTGCTGAACCTTTCACATTGAAATCTACATACTGCCATCTTGACAAAGATGCAAAGGTTTTTCTGTAG 2925 0.3932 MAKGTRLFHFFQFLAMLLFTSYSIFLPCVSLTLESQALLQFKNHLKEPLNSLGTWNESDSPCEFYGITCDPVSGKVTEMSLDNKSLSGDISPSLSVLQSLQVLSIPSNLISGKLPSEISTCTNLRVLNLTGNLLVGPIPDLSGLRNLQVLDLSANYFSGSIPSWLGNLTGLVSLGLGENEYTEGEIPETLGNLKNLTWLYLGGSHLIGEIPESIYEMKALETLDISRNKISGKISRSISKLENLYKIELFANNLTGEVPAELANLTNLQEIDLSANSMYGRLPEEIGNMKKLVVFQLYENSFSGELPSGFGDMQHLIGFSIYGNSFTGMIPENFGRFSPLESIDISENQFSGDFPKFLCESRKLRLLLALQNNFSGNFPKSYVACKSLERFRISRNHLSGKIPDDVWALPYVNIIDLAYNDFTGEVSSEIGFSTSLSQLFLSKNRFSGKLPSDLGKLLSLEKLYLSYNNFSGEIPPEMGSLKQLSSLHLEENSLTGSIPAELGHCAMLVDLNLAWNSLSGNIPQSVSLMSSLNSLNISGNKLTGSIPDNLETMKLSSVDFSENQFSGRIPSGLFIIGGEKAFLGNKGLCVEENLKPSMNSDLKICAKNNGQTRVFSDTFIFLLFIASIIVVILAGFLLLRCRSIKHGAEKNLQGQKEASQRWKLASFHQVDIDADEICNLDEDNLIGSGSTGKVYRVELRKNSAIVAVKQLGKVDGVKILAAEMEILGKIRHRNILKLYACLLKGGSNLLVFEYMPNGNLFQVLHRQIKDGKPELDWNQRYKIALGAAKGIAYLHHDCSPPVIHRDIKSSNILLDEDYEPKIADFGIARFAEKSNNQLSYSCLAGTYGYIAPELAYTININEKSDVYSFGVVLLELVSGREPIEEDYGEAKDIVYWALTHLNDRETVLNILDDRVASEHAEDMIKVLKIAIKCTTKLPSLRPTMREVVKMLFGAEPFTLKSTYCHLDKDAKVFL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00020 974 Pfam Protein kinase domain 682 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00020 974 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Gabi1943g00020 974 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00020 974 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Gabi1943g00020 974 Gene3D Ribonuclease Inhibitor 185 243 IPR032675 -
Gabi1943g00020 974 Gene3D Ribonuclease Inhibitor 244 313 IPR032675 -
Gabi1943g00020 974 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 217 951 - -
Gabi1943g00020 974 SUPERFAMILY RNI-like 259 572 - -
Gabi1943g00020 974 FunFam LRR receptor-like serine/threonine-protein kinase 215 290 - -
Gabi1943g00020 974 Gene3D Ribonuclease Inhibitor 314 599 IPR032675 -
Gabi1943g00020 974 Gene3D Phosphorylase Kinase; domain 1 645 754 - -
Gabi1943g00020 974 FunFam Probable inactive receptor kinase RLK902 31 189 - -
Gabi1943g00020 974 SUPERFAMILY L domain-like 59 308 - -
Gabi1943g00020 974 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Gabi1943g00020 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Gabi1943g00020 974 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Gabi1943g00020 974 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Gabi1943g00020 974 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Gabi1943g00020 974 ProSiteProfiles Protein kinase domain profile. 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00020 974 SMART LRR_typ_2 481 505 IPR003591 -
Gabi1943g00020 974 SMART LRR_typ_2 144 168 IPR003591 -
Gabi1943g00020 974 SMART LRR_typ_2 529 553 IPR003591 -
Gabi1943g00020 974 SMART LRR_typ_2 193 217 IPR003591 -
Gabi1943g00020 974 SMART LRR_typ_2 457 480 IPR003591 -
Gabi1943g00020 974 SMART LRR_typ_2 97 121 IPR003591 -
Gabi1943g00020 974 SMART LRR_typ_2 265 289 IPR003591 -
Gabi1943g00020 974 FunFam Receptor-like protein kinase HSL1 291 598 - -
Gabi1943g00020 974 FunFam leucine-rich repeat receptor-like protein kinase TDR 755 962 - -
Gabi1943g00020 974 Gene3D Transferase(Phosphotransferase) domain 1 755 961 - -
Gabi1943g00020 974 CDD STKc_IRAK 686 951 - -
Gabi1943g00020 974 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Gabi1943g00020 974 SUPERFAMILY Protein kinase-like (PK-like) 677 953 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00020 Gabi-Chr1943 146878 151449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00020 24 956 Receptor kinase-like Gene Family AT1G72180 56.946 0.0 1042
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1943g00020 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00020 - - gmx:100789704 1605.88