Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00018 ATGGATATACCATCCAATTCCAGTAAGTGTGAGATAGTGGAAGAGATCATTTCTGAGTTCAAAGTATATGAGAAGCCTGAGAGTAGTTGTGCCCACAAATTAGGAAAAAAATATTCTATTGAGGATGATATCAATAGTCTTTTCCATGCCATTGATATTAAAAATTCAGCCAGAGGTCCTAATACACCACGTTCACATTCACAGAAGAGTGCTCTTAAAAAGCCCATGAGAGTCACTTCATCTAGGGCCTCAGAAATTGGCATCTCAGAACCTGTAAGTTTAAAGCAGGCACTTAGAGGGTTGTGCATCTCACAGGCATCAGAAATGGCTGCTTTGAAGCGACTGTCAAAGTCACCCAAATCATCAAGAGTATCGGAGGCTGGAACCATCAAAAAGTTGTATACAGAAGTAGTAGATGAGCGGCAAGGGGACTTGGTGGAAATCTCCCATGTGCCCGAGATATCTAAGCCTTCTGATAAATTGTGCAGCAACGAGAATCACGAGATATCAACTTCAACTTCAAGTGCTCATCATTCTATTCCTTTTGTTGATGCAACAAACCCAAAAACAACCAGATCAGCATACCGAAATCAAATTGTTCCTCTTCCATCAGAAGCTCAGGCTGAGAAGCTAGTCACTGGGCTGGGAAAACAAATACTTGCAAATTCATCTTCAGTTGCCTATGCAAGCGATGAAGTGTTGGAGGTCAGACTAAAAACAGTTCCTGCTTCCTCCAGCAAAGATTCTCTCAGTTCTTCAACGCCAGATAAGGGGATGGAAGCAAAGTTAATTTCTCCGGCTTCACCACCTAGTTCTGGCACTGGTAATGGAGTGGATAAGCCCACAGGAAATAATACATCTTTGGCAAAGCCAATTTTCAAGGACAAGAACTTTCTTATGAAAAAAGAAAAGCAAGATTTATGTTCTTCCTCGAGCTGCTCCACTTCATGTACCAGAAATAATGGCAATAATTTGGCTTCTAGTACAAGTAATTTGAACAAGGTGACTGACAATTCTGATTTAAAGAATGAAATGAAAGAAAACGAGAAACTATCCCTCAGCTGTTCAAATCATACCATTGAAGTTTACTCAGTTAATGTTGGCATGGATTCAAGGAAACTTGGTTTCAGTTTGACTAGTAAAAGGAGAACTAAGTTTCAGGTGACAAAAATTGATGATAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCCCAAAGTTCAAAAAGTAGCATTGGTGAGTATAGGGCTAGTACAAGCATCAGTGAGGATAGCAATCCAAGTGTTTCCACTAGCAGTGGCCACAGACCTCACATGTCAAAACACTCGAGATGGGAAGCAATTTTTGTTGTTCAGCAGCGGTATGGTCATTTAAGTTTGAAGCACTTCAAACTGCTCAGGAGGCTTGGTTGTGGGGACATTGGAACTGTTTATCTTGCGGAACTAATTGGTACAGGCTGCCTTTTTGCACTGAAAGTGATGGACAATGAATTTTTGGCAAGCCGGAAGAAAATGTGCAGGGCACAAACAGAGAGAGAGATTCTGCAGATGCTGGATCATCCGTTTCTTCCTACGCTTTATGCCTATATTGCAACAGGTAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGTGGAGATCTGCATGTGCTGCGGCAGAGGCAACCCTGTAGGAGTTTTTCGGAACAAGCAGCCAGGTTTTATGTTGCTGAAGTTCTCCTTGCCCTGGAGTATTTGCGCATGCTAGGAGTTGTATATCGAGACCTGAAGCCTGAAAATATCCTAGTACGAGAAGATGGCCATATTATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTCAATCCAATGGTAGTCAAGGCATCTTCACCAGAGGTGAACCAAAGAAAGATGTCCAGCCCTTGTTCTGAGGCTAACTGCATACATCCTTTCTGTCTCCAACCAAATTGGCAGGTCTCATGCTTTACTCCGATTCTATTATCAACCGGAGCAAAATCTCAAAAAACTAAGGCTGATATAGCTGCTCAGGTTGGTCCACTTCCACAGCTTGTAGTGGAGCCTACTAGTGCACGTTCTAACTCTTTTGTTGGAACATATGAATACCTTGCTCCAGAGATCATCAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTTGGTATATTTTTGTTTGAGCTTTTATATGGTAAGACTCCATTCAAAGGCCCTGCAAATGAAGATACATTGGCCAATGTAGTGTCACAGAGCCTTAAGTTCCCTGATGCTCCTATTGTCAGTCTTCAAGCAAGAGATTTGATCAGACGATTGTTAATAAAAGACCCTGAAAGGAGATTTGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCATTCCTTCTTTGAAGGCCTCAATTGGGCTCTGATACGGTGTGCAGCACCACCCGAGCTCCCCAAATTTCGTGATTTTGGAACTAGTGCGCAATCTATGGCTCCACGCAAAGAGAATGCCAATCATTTAGGGGAAACAGAAGATTGTGGGGAGTTTGGCCTGTTTTAG 2541 0.4231 MDIPSNSSKCEIVEEIISEFKVYEKPESSCAHKLGKKYSIEDDINSLFHAIDIKNSARGPNTPRSHSQKSALKKPMRVTSSRASEIGISEPVSLKQALRGLCISQASEMAALKRLSKSPKSSRVSEAGTIKKLYTEVVDERQGDLVEISHVPEISKPSDKLCSNENHEISTSTSSAHHSIPFVDATNPKTTRSAYRNQIVPLPSEAQAEKLVTGLGKQILANSSSVAYASDEVLEVRLKTVPASSSKDSLSSSTPDKGMEAKLISPASPPSSGTGNGVDKPTGNNTSLAKPIFKDKNFLMKKEKQDLCSSSSCSTSCTRNNGNNLASSTSNLNKVTDNSDLKNEMKENEKLSLSCSNHTIEVYSVNVGMDSRKLGFSLTSKRRTKFQVTKIDDKSRSKEKGEFSQSSKSSIGEYRASTSISEDSNPSVSTSSGHRPHMSKHSRWEAIFVVQQRYGHLSLKHFKLLRRLGCGDIGTVYLAELIGTGCLFALKVMDNEFLASRKKMCRAQTEREILQMLDHPFLPTLYAYIATGKLSCLVMEYCPGGDLHVLRQRQPCRSFSEQAARFYVAEVLLALEYLRMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMVVKASSPEVNQRKMSSPCSEANCIHPFCLQPNWQVSCFTPILLSTGAKSQKTKADIAAQVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGIFLFELLYGKTPFKGPANEDTLANVVSQSLKFPDAPIVSLQARDLIRRLLIKDPERRFGSVKGAAEIKQHSFFEGLNWALIRCAAPPELPKFRDFGTSAQSMAPRKENANHLGETEDCGEFGLF 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 242 258 - -
Gabi1943g00018 846 ProSiteProfiles Protein kinase domain profile. 462 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 309 335 - -
Gabi1943g00018 846 SMART serkin_6 462 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 157 187 - -
Gabi1943g00018 846 Gene3D Phosphorylase Kinase; domain 1 460 541 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 387 438 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 387 403 - -
Gabi1943g00018 846 PANTHER FLIPPASE KINASE 1-RELATED 272 815 - -
Gabi1943g00018 846 Gene3D Transferase(Phosphotransferase) domain 1 542 611 - -
Gabi1943g00018 846 CDD STKc_phototropin_like 460 818 - -
Gabi1943g00018 846 FunFam serine/threonine-protein kinase D6PK-like 690 813 - -
Gabi1943g00018 846 Gene3D Transferase(Phosphotransferase) domain 1 689 813 - -
Gabi1943g00018 846 FunFam Serine/threonine-protein kinase D6PK-like 460 545 - -
Gabi1943g00018 846 FunFam serine/threonine-protein kinase D6PK-like 546 613 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 404 435 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 58 84 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 164 187 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 267 290 - -
Gabi1943g00018 846 Pfam Protein kinase domain 463 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00018 846 Pfam Protein kinase domain 692 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1943g00018 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 55 84 - -
Gabi1943g00018 846 MobiDBLite consensus disorder prediction 241 290 - -
Gabi1943g00018 846 SUPERFAMILY Protein kinase-like (PK-like) 436 817 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00018 Gabi-Chr1943 116861 119864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00018 10 846 AGC Kinase Gene Family AT3G52890 45.530 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi1943g00018 Pkinase 3.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00018 - - gmx:100789339 1176.39