Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00015 ATGACTCCAGTTAATTTGGCAGGTCAGTTTGGTGACACCACATACACCAAAGTGTTTGTTGGAGGATTGGCTTGGGAGACTCAAAAAGAAACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGGGAACCGGAAGCTGCCATGAGAGCCTGCGTGGATGCTGCTCCTGTAATTGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACGCCAAAGCATGGTGGAGGAGGAGGAGGAGGGAGGAACTTTAGGGTAATGAGTTCATTCCAGACAGGATATGGAGGGGGAGTGGGATCGGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGAATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATAGTGTGTATGGAGGAGCAACGGCACAGTACCCAGTTTATGGAACGGGACCAGGAGGGATGATGACGGGTGCTGCAGCAGCGGCAGCGTTTTACCCATATCTGCAATACGGAGGAGAAGGGAGTGGCGCCGCCGCCTCAACCGGCGGTTATAGTTCCGGTCAGGGTTACGGTGTGAACTACCCGCCTCAGCTGTTTCAGTATTCTCCGATTGGTTCAACTGGTGGATACGCGCAGCACTATGGAACACCCATGTCTCTTGCACCTTCCCCTGCTTTGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCGATTCCTCATCGCTAG 831 0.503 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGGGRNFRVMSSFQTGYGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGATAQYPVYGTGPGGMMTGAAAAAAFYPYLQYGGEGSGAAASTGGYSSGQGYGVNYPPQLFQYSPIGSTGGYAQHYGTPMSLAPSPALQSGVTMALQAPIPHR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00015 276 Gene3D - 11 132 IPR012677 -
Gabi1943g00015 276 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gabi1943g00015 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Gabi1943g00015 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Gabi1943g00015 276 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Gabi1943g00015 276 PANTHER BOULE-RELATED 6 261 - -
Gabi1943g00015 276 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Gabi1943g00015 276 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00015 Gabi-Chr1943 110064 115842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00015 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 6.10e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00015 - - aip:107629746 442.965