Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00011 ATGTCCATCACACGGGAAGCTCAAGCTCAAGCTGAAGCTGAAGCCACTGCACCCGGCCCATCAACCAAACGGGGCTCCAGGAAGCGTGCCCGTGACCCTGATTCGGCATTCCGTGGGGTGCGCAAACGCAGCTGGGGACGCTACGTTTCGGAGATAAGGTTGCCGGGTCAGAAAACCCGGATATGGCTCGGTTCATTCGGGTCGGCGGAGATGGCGGCTCGAGCATATGACTCAGCGGCTTTCTTCTTGAAAGGAAGCTCTGCTAACCTTAATTTCCCACACCTGGTTGAGTCGCTACCTCGTCCTCTGTCTTCATCAAGGAGAGACATTCAATCGGCGGCTGCAAAAGCGGCTCTGGAGCTGGTTCAGGAACGGAGCCAACACCAGGCTCCGCCACGCTCTTCTTCTTCTGCAAAAACAGATTCCGTGGATTGGTGGGATCATTTAGGAGAAGACTCCATTTGGACGACGTCGTTTGAGGATGTGAAAGAAGCTCCTCTTATGAGTCCCCTTAGGATAGAGTCCTCTCTTGGAGAATTGACATGGAACGAAGTATTAAATTTCAATGATGAGATTCTCATGAATACGATGGCATCAACAACACCCACCCTTTTTTAG 618 0.521 MSITREAQAQAEAEATAPGPSTKRGSRKRARDPDSAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFGSAEMAARAYDSAAFFLKGSSANLNFPHLVESLPRPLSSSRRDIQSAAAKAALELVQERSQHQAPPRSSSSAKTDSVDWWDHLGEDSIWTTSFEDVKEAPLMSPLRIESSLGELTWNEVLNFNDEILMNTMASTTPTLF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00011 205 MobiDBLite consensus disorder prediction 122 141 - -
Gabi1943g00011 205 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Gabi1943g00011 205 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Gabi1943g00011 205 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Gabi1943g00011 205 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Gabi1943g00011 205 MobiDBLite consensus disorder prediction 1 38 - -
Gabi1943g00011 205 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Gabi1943g00011 205 MobiDBLite consensus disorder prediction 127 141 - -
Gabi1943g00011 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 151 - -
Gabi1943g00011 205 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Gabi1943g00011 205 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Gabi1943g00011 205 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Gabi1943g00011 205 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00011 Gabi-Chr1943 67180 68030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00011 22 118 AP2-EREBP Transcription Factor Family AT5G11590 59.794 1.56e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1943g00011 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00011 K09286 - gmx:100783790 198.749