Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00009 ATGGTGGTCAACGAGAGACCCGCGAAGAGGATGAAGAGGAGGGTCACCGCCGATCTCTATGATTTTCTCACTTTCCCCGCTGCCGGAGACGACTCCTCCTCTGTAGCCTTCCGAAACTCTGTTCAGCGCTTCCTCTACGACCACGCGCGCATCACTTTCCCTCCCTCGCTCTTTCCTTCCCTCATGACGTGGCGGATCTTGTTTCGGGTCGGTGAACTCGTCGACGGTCCCGATCTCTCGCCGGCCACGGTCACACTCGACATTGTCGAGGAAGACGTCACTCGTTCTCGCAGTTCAGTCTACTGCGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCTGTATGTCGAAAGCGATATCATTTCATAATAAGGGCGGCAAGTAACGCCATCGAAGCATATAGAAGACCTTGTTCAAGATGTGGAAGTCTTCTCCAATTATCTGAACCCAGGTGTAAATCGTGTAACTTCGCCACTACCGCTGATGATCTTGAGGATTGGGTTTATCTTCAAATTGAGGATAACACCCATCTTCTCCATGGTGTTATTCACGTCAATGGTTATGGTCACCTCCTTACTCTCAATGGACGAGAAGGTGGATCGAAGCTTCTCTCTGGATCTGATATTATGGGTTTCTGGGATAGGCTCTGTGCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGGTGGAATATCGATTGCTTCATGCAATCACCAACGGATACTCCTGGTATGGCAATTGGGGTTATAAATTTGGGACTGGCAGCTATGCTCTTACCCAAGATGCGTACCAGAAAGCAGTGAATACCCTGTCAAGCATGCCCTTGTCCTCATTTTTATTTCAGGGTCGAGGACAACGAAGCCGCCTCCAGTGTGTCATTTCTCTTTACCAGTCTTTGGCTGATACTCAACTTCTAACAATTAAAGATATCTTCTCCTTTTTGTTGACATTGGTTCATGAACTTCGTAAGCCCATGACCACGAGCACATCTAAACGGCATGAATACACTAGCACGCCTAATTTATTGTGTGTTTGGACGAGAAATGACGTTGAAGATGTGCAACAGGCTTTGATCAAGGTACTGCTTGCATCAGGTGCCTATAGTGAGGCCAAATGGGTGTCAAGGCGTACTCTCAAGGGTGCAGTATGCAGGGGTGTTGCATCTCCAGAGCTTCTAGATTACGGTCTTAAGCACTTACAAGGGAAATTAGCTTCCAATGGAATGGTAGTTTGTTCACGATGCAATCCCATTTCTAGTGCTGTCGAATTCAGGCTAGAGCCTTTGGGTAACGCATTTAGTGCAAATTCAAGCTATCCGTCAGAAGAGCAAGTGATCTCTGATTTGACATTCTTATTTGATTCAATTATTCATCCTGACAAATTAGTAAGCTACAGACCTAAAATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTACTTGACTGTAAGCAGTTTATGAAGGATTACAAGCCGAATGAAATGGCCTTAGAAATGCCTTCAGACATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAAGACGATCCACCCCCACCGCCAGAGTTAATTGTGTTGCCTTTGAACGCTACTGCTGCTGACCTCAAAAGCGAAGCCGCAAGTGCTTTTCAAGATGTATATGCAATGTATAAGAGGTTTAAAGCTGAGGATCTCCTAGGATTTGGGTCAATCAGTGATTCGCTCACTGTAAAATTCCTGCTTGGAACAAGTGGATCAGTCCAAATTCGAGGTAAATGCCCAGCCAAACACGGGCTAAGTCGATTCCGCATGGAAAGAGGAACCGAGGCATGGAAAGTTGATTGCACTTGTGGGGCCAAGGATGATGACGGAGAAAGGATGTTAGAATGTGAAACTTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGCCATGCCTTCAAAGTTTGTATGTACAAGGTGTGTTAAATCTTATCGCGAAGAAACTAACAAGCCATGTAAATTGAACGCATTTTGTAGAGATGAAGCGGTGGTAACCGACTGTGCAGCTGTTTGTAACCTTACGGTAGATTTTGGTGTACGCTGA 2106 0.4615 MVVNERPAKRMKRRVTADLYDFLTFPAAGDDSSSVAFRNSVQRFLYDHARITFPPSLFPSLMTWRILFRVGELVDGPDLSPATVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAIEAYRRPCSRCGSLLQLSEPRCKSCNFATTADDLEDWVYLQIEDNTHLLHGVIHVNGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCAAISVRKVSVMDLSKKFGVEYRLLHAITNGYSWYGNWGYKFGTGSYALTQDAYQKAVNTLSSMPLSSFLFQGRGQRSRLQCVISLYQSLADTQLLTIKDIFSFLLTLVHELRKPMTTSTSKRHEYTSTPNLLCVWTRNDVEDVQQALIKVLLASGAYSEAKWVSRRTLKGAVCRGVASPELLDYGLKHLQGKLASNGMVVCSRCNPISSAVEFRLEPLGNAFSANSSYPSEEQVISDLTFLFDSIIHPDKLVSYRPKIMRKRVADSARKLLDCKQFMKDYKPNEMALEMPSDIRLWCHVELSDQPKDDPPPPPELIVLPLNATAADLKSEAASAFQDVYAMYKRFKAEDLLGFGSISDSLTVKFLLGTSGSVQIRGKCPAKHGLSRFRMERGTEAWKVDCTCGAKDDDGERMLECETCGVWQHTRCAGIDNSDAMPSKFVCTRCVKSYREETNKPCKLNAFCRDEAVVTDCAAVCNLTVDFGVR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00009 701 SMART PHD_3 616 662 IPR001965 -
Gabi1943g00009 701 CDD PHD_MMD1_like 616 661 - -
Gabi1943g00009 701 ProSitePatterns Zinc finger PHD-type signature. 617 661 IPR019786 -
Gabi1943g00009 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 671 - -
Gabi1943g00009 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 669 IPR013083 -
Gabi1943g00009 701 Pfam PHD-finger 617 663 IPR019787 -
Gabi1943g00009 701 SUPERFAMILY FYVE/PHD zinc finger 606 664 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00009 Gabi-Chr1943 52596 56044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00009 7 661 PHD Transcription Factor Family AT5G22260 28.012 7.04e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1943g00009 PHD 5.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00009 K26271 - gmx:100780558 1155.97