Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1943g00008 ATGGCTTCTTCTAATGGTGGTGTGCCTCCGGGATTTAGATTTCATCCGACGGATGAAGAACTGCTTCATTACTATTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGATGTCATTAGAGAGGTGGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGAAAGTACCCCACGGGGTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCCACAGGAAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCACGAGTACCGCCTCGAAGATAGCAATGATCCTCAAGGGAACAACAATGAAGATGGCTGGGTGGTTTGCAGGGTTTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGTGGCTCCACACACAACTCAAACCAACAAGCCAACAATTCCTCAGGCACCAATGCTCGCTCCTTCATGCACAGGGAAAATCAGTACTTACTCCATCAACAACAAAACCCTAGGAACCCATCAGGGTTTGAGCTAGATAAACCTGAGCTTGCTCTCCACTATCCCCATTTGCAAAACCCTCAATACTCACTCTTCCAGTCCCAACCTCTTCTTCATACCCAAAAACCATTGGTTTATGACTACTCATATGCATCATCTTTGCCATCAGACCCTCCTATCATAGCGAAGCAGCTCATGACAAACCCTAGAGACTGTGAGAGCGGCAGCGATGGCCTCAGATACCAAGTTTCGGAGCCTGGCATGGAAGTTGGCTCGTGCGAACCAGCTCAAGAAATGGGTGCTGGAAGAAGTGAAGGAATGAATGAATGGGGTGTGCTTGATAGGCTAGTGACCACCCATCTTGGAAACGAAGACTCAACCAAAGGGGTTAGGTTTGAGGATGCAAATCCACAGTCTGTTCACCAAATCAACCAGCTTTCATTGCGGGGAGAGATGGACTTTTGGGGCTATGGAAAACAATGA 1086 0.4595 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDSNDPQGNNNEDGWVVCRVFKKKNLFKIGNEGGSTHNSNQQANNSSGTNARSFMHRENQYLLHQQQNPRNPSGFELDKPELALHYPHLQNPQYSLFQSQPLLHTQKPLVYDYSYASSLPSDPPIIAKQLMTNPRDCESGSDGLRYQVSEPGMEVGSCEPAQEMGAGRSEGMNEWGVLDRLVTTHLGNEDSTKGVRFEDANPQSVHQINQLSLRGEMDFWGYGKQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1943g00008 361 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Gabi1943g00008 361 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Gabi1943g00008 361 MobiDBLite consensus disorder prediction 167 187 - -
Gabi1943g00008 361 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Gabi1943g00008 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 206 - -
Gabi1943g00008 361 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Gabi1943g00008 361 FunFam NAC domain-containing protein 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1943g00008 Gabi-Chr1943 38313 40731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1943g00008 1 357 NAC Transcription Factor Family AT1G33280 56.198 4.88e-129 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1943g00008 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1943g00008 - - gmx:100804181 678.707