Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1942g00018 ATGTCCTCACAAGCAGCACGGTTGCATATCGAAGACAGCCATGTGGTCATGGACAATGGCATATTGCAAGTGTATTTATCCAATCCGGGTGGATTTGTCACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGTTCTTAACGAAAGGGATAATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCAGGAAGTACAGGAACAACAGGGACATTTGAGCGAGTTGTAGGAACAAGGTTTCATGTTATAGTGGAAAATGAGGAGCAGGTTGAAATCTCATTTACAAGAATGTGGGATCTATCTCTGAAGGGAAAACAATCGCCTCTAAATATCGACAAAAGGTATGTGATGCTTCGTAATTCCTCAGGCTTCTATTCTTACGCCATCTTTGAACACCTAAAGGAGTGGCCTGCTTTCAACATACCTCAAATCAGGATTGTTTATAAGCTTCGAAAAGACAAGTTTCATTACATGGCCATAGCGGATAATAGACAAAGATTCATGCCTCTCCCAGAAGACCGATTACCCAGAAGAGGAAAAGAACTAGTTCCCCCAGAAGCAGTTTTGCTCGTCAACCCCGTGGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAGTATTCAAGTGACAACAAAGATCTTAAGGTCCATGGGTGGATAAGTAGCGAATCCGAAACTGATCCATCAATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCAGATCAGGTGGCCCTGTTAAACAGAACCTTACCTCCCATGTAGGCCCTATCAGCCTTGCAATGTTTCTTAGTGCTCATTACGCCGGAGAGGATATAGTTCTGAAACTCCAGCCAAATGAGCCATGGAAAAAAGTTTTCGGGCCAACTTTTGTCTATCTTAACACTTTGTTAGATGATGAGGACCCACTGATGCTCTGGGAGGACGCCAAAAATCAGATGAACGAGGAGGTTCAAAGTTGGGCCTATGATTTCCCAGCTTCAGAGGATTTTCAGAAATCTAGCAGACGAGGCAGTGTGTGTGGCACGTTACTAGTTCAAGACAGGTGCTTAAGTGACGATTACATGTTAGCACAAGGCGCGTATGTAGGACTGGCACCACCTGGAGACGCTGGGTCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAACGAGAACGGCTACTTCTCAATCAATAATATACGTAGTGGGGATTACAGTCTCTACGCCTGGGTCCCAGGTTTCATTGGAGAGTATTGGAACAATGCTGTCCTCACCATAACCCCAGGTTGTGAAATAAACGTTGGTGACATTATTTATGTGCCTCTAAGAGATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGAGTTCTACGTTCCTGATCCTAATCCAAAGTACATAAACAAGCTTTATGTCGACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTGGTTTATACAGTTGGTGTCAGTGACTACAGAAAAGATTGGTTCTTTGCACAGGTCACCAGGAAGAAAAATGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTTGATAAGGTGGAGGCAAGTGGAATCTATAAATTGCGATTGGCGCTTGCAAGTGCAAATGTCTCCGAATTACAGGTTAGAGTGAATGATCTAAAACGAGATCCTCCATTATTTACAACGGGGGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTTTACTGGCTATACAGCATTGATATGCCAGGTCTTCTGCTAGGGGAAGGCGTTAATACCATATTTCTAACACAGACCATAGCTACTGGCCCCTTCCAGGGGATAATGTATGACTATATTCGTCTAGAAGGCCCTAACAAAAAATATTAA 1929 0.4339 MSSQAARLHIEDSHVVMDNGILQVYLSNPGGFVTRIQYNGIDNLLEVLNERDNRGYWDVVWSEAGSTGTTGTFERVVGTRFHVIVENEEQVEISFTRMWDLSLKGKQSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAIADNRQRFMPLPEDRLPRRGKELVPPEAVLLVNPVEPEFKGEVDDKYQYSSDNKDLKVHGWISSESETDPSMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDDEDPLMLWEDAKNQMNEEVQSWAYDFPASEDFQKSSRRGSVCGTLLVQDRCLSDDYMLAQGAYVGLAPPGDAGSWQRECKGYQFWTRANENGYFSINNIRSGDYSLYAWVPGFIGEYWNNAVLTITPGCEINVGDIIYVPLRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDKFRQYGLWERYADLYPNEDLVYTVGVSDYRKDWFFAQVTRKKNDGSYQGTTWQIKFNLDKVEASGIYKLRLALASANVSELQVRVNDLKRDPPLFTTGVIGKDNAIARHGIHGLYWLYSIDMPGLLLGEGVNTIFLTQTIATGPFQGIMYDYIRLEGPNKKY 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1942g00018 642 Gene3D - 8 278 IPR014718 GO:0030246
Gabi1942g00018 642 CDD RGL4_N 7 298 - -
Gabi1942g00018 642 FunFam Rhamnogalacturonate lyase B 335 434 - -
Gabi1942g00018 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 10 639 - -
Gabi1942g00018 642 SUPERFAMILY Starch-binding domain-like 360 436 IPR013784 GO:0030246
Gabi1942g00018 642 Pfam Polysaccharide lyase family 4, domain III 447 635 IPR029411 -
Gabi1942g00018 642 CDD RGL4_C 449 636 - -
Gabi1942g00018 642 SUPERFAMILY Galactose mutarotase-like 12 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi1942g00018 642 Gene3D - 445 636 - -
Gabi1942g00018 642 CDD RGL4_M 338 437 IPR029413 -
Gabi1942g00018 642 Gene3D - 335 434 - -
Gabi1942g00018 642 Pfam Rhamnogalacturonate lyase family 8 203 IPR010325 -
Gabi1942g00018 642 SUPERFAMILY Galactose-binding domain-like 444 636 IPR008979 -
Gabi1942g00018 642 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Gabi1942g00018 642 Coils Coil 551 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1942g00018 Gabi-Chr1942 224584 229315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1942g00018 1 639 Polysaccharide Lyase AT1G09890 65.156 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1942g00018 K18195 - gmx:100815677 1171.76