Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1942g00011 ATGGTGTTGAGGAAAGTAGGCAAGTATGAGATTGGGAGAACCGTCGGGGAAGGAACCTTTGCTAAGGTCAAGTTCGCTCAGAACACTGAAACTGGTGAGAGTGTCGCAATGAAGGTGCTCGATCGTAGCACCATCATCAAGCACAAAATGGTCGACCAGGTTCTAGCAAGCCGTACCAAGATTTATATCATATTGGAGTTCATTACAGGTGGTGAACTGTTTGATAAAATTGTACACCATGGGCGTCTTAGTGAAGCTGAATCTAGAAGATATTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTTCCTGAACAGGGGGTTAGTATGCTTCGGACAACTTGTGGAACTCCTAATTATGTGGCTCCTGAGGTACTCAGTCACAAGGGTTATAATGGTGCTCTAGCAGATGTTTGGTCTTGTGGGGTTATCCTCTATGTTCTAATGGCTGGTTATCTTCCCTTTGATGAGCTTGATCTAACCACGTTATACAAGAAGATTGAGAAAGCAGAGTTTTCATGCCCTCCTTGGTTTCATGTGGGAGCAAAATCTTTGATACATAGAATTTTGGACCCAAATCCTGAACATCGTATAACCATTCAGCAGATTAGAAATGATGAGTGGTTTCAAAAAGGCTATGTTCCCGTCAGTCTCCTTGAGTATGAAGATGTAAATCTGGATGATGTAAATGCTGCATTTGACAATGCCGAGGATCAGAGGGCTAATCAACAATGTGAGAATGAGAGCAGGGGTCCCCTAATTCTTAATGCATTCGACTTGATAATTTTATCTGAAGGCTTAAACCTTGCAACACTCTTTGATAGTAGACAGGACTCTACAAAATACCAAAAGCGCTTCATCACTCAAAAGCCTGCAAAGGTGGTTTTATCGAGTATGGAAGTTGTGGCACAATCAATGGGGTTTAAGACGCATATTCGCAACTATAAGATGAGAGTAGAGGGTATTTCAGCGAATAAAACTTCTTATATCTCAGTTATGCTGGAAGTTTTTGAAGTTGCTCCCACATTTTTCTTGGTGGACATTCAGAAAGCAGCTGGAGACGCAGGTGAATATCTCGAGTTCCACAAGAATTTTTGTAGCAATCTTGAGGATATCATCTGGAAACCGCCTCATGAAACAAGCAAATTAAGGATCTCCAAGACTAAAAGCAAAAGACAGTAG 1278 0.4061 MVLRKVGKYEIGRTVGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQVLASRTKIYIILEFITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSAFPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGALADVWSCGVILYVLMAGYLPFDELDLTTLYKKIEKAEFSCPPWFHVGAKSLIHRILDPNPEHRITIQQIRNDEWFQKGYVPVSLLEYEDVNLDDVNAAFDNAEDQRANQQCENESRGPLILNAFDLIILSEGLNLATLFDSRQDSTKYQKRFITQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKTSYISVMLEVFEVAPTFFLVDIQKAAGDAGEYLEFHKNFCSNLEDIIWKPPHETSKLRISKTKSKRQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1942g00011 425 Pfam NAF domain 284 342 IPR004041 GO:0007165
Gabi1942g00011 425 Gene3D Kinase associated domain 1, KA1 286 407 - -
Gabi1942g00011 425 FunFam Non-specific serine/threonine protein kinase 282 406 - -
Gabi1942g00011 425 Pfam Protein kinase domain 9 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1942g00011 425 FunFam Non-specific serine/threonine protein kinase 51 282 - -
Gabi1942g00011 425 CDD CIPK_C 288 403 - -
Gabi1942g00011 425 Coils Coil 258 278 - -
Gabi1942g00011 425 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Gabi1942g00011 425 SUPERFAMILY Protein kinase-like (PK-like) 6 253 IPR011009 -
Gabi1942g00011 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Gabi1942g00011 425 ProSiteProfiles NAF domain profile. 282 306 IPR018451 GO:0007165
Gabi1942g00011 425 Gene3D Transferase(Phosphotransferase) domain 1 4 285 - -
Gabi1942g00011 425 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 394 - -
Gabi1942g00011 425 SMART serkin_6 9 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1942g00011 425 ProSiteProfiles Protein kinase domain profile. 9 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1942g00011 Gabi-Chr1942 119628 125426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1942g00011 1 367 CBL-interacting serine-threonine protein kinases AT4G24400 76.546 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi1942g00011 Pkinase 4.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1942g00011 - - gmx:100785444 765.377