Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1942g00010 ATGGTGTTGAGGAAAGTAGGCAAGTATGAGATTGGGAGAACCGTCGGGGAAGGAACCTTTGCTAAGGTCAAGTTCGCTCAGAACACTGAAACTGGTGAGAGTGTCGCAATGAAGGTGCTCGATCGTAGCACCATCATCAAGCACAAAATGGTCGACCAGATCAAGAGGGAGATTTCTATAATGAAGCTAGTCAGACATCCATATGTTGTTCGTCTATATGAGGTTCTAGCAAGCCGTACCAAGATTTATATCATATTGGAGTTCATTACAGGTGGTGAACTGTTTGATAAAATTGTACACCATGGGCGTCTTAGTGAAGCTGAATCTAGAAGATATTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTTCCTGAACAGGGGGTTAGTATGCTTCGGACAACTTGTGGAACTCCTAATTATGTGGCTCCTGAGGTACTCAGTCACAAGGGTTATAATGGTGCTCTAGCAGATGTTTGGTCTTGTGGGGTTATCCTCTATGTTCTAATGGCTGGTTATCTTCCCTTTGATGAGCTTGATCTAACCACGTTATACAAGAAGATTGAGAAAGCAGAGTTTTCATGCCCTCCTTGGTTTCATGTGGGAGCAAAATCTTTGATACATAGAATTTTGGACCCAAATCCTGAACATCGTATAACCATTCAGCAGATTAGAAATGATGAGTGGTTTCAAAAAGGCTATGTTCCCGTCAGTCTCCTTGAGTATGAAGATGTAAATCTGGATGATGTAAATGCTGCATTTGACAATGCCGAGGATCAGAGGGCTAATCAACAATGTGAGAATGAGAGCAGGGGTCCCCTAATTCTTAATGCATTCGACTTGATAATTTTATCTGAAGGCTTAAACCTTGCAACACTCTTTGATAGTAGACAGGACTCTACAAAATACCAAAAGCGCTTCATCACTCAAAAGCCTGCAAAGGTGGTTTTATCGAGTATGGAAGTTGTGGCACAATCAATGGGGTTTAAGACGCATATTCGCAACTATAAGATGAGAGTAGAGGGTATTTCAGCGAATAAAACTTCTTATATCTCAGTTATGCTGGAAGTTTTTGAAGTTGCTCCCACATTTTTCTTGGTGGACATTCAGAAAGCAGCTGGAGACGCAGGTGAATATCTCGAGTTCCACAAGAATTTTTGTAGCAATCTTGAGGATATCATCTGGAAACCGCCTCATGAAACAAGCAAATTAAGGATCTCCAAGACTAAAAGCAAAAGACAGTAG 1341 0.4042 MVLRKVGKYEIGRTVGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLYEVLASRTKIYIILEFITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSAFPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGALADVWSCGVILYVLMAGYLPFDELDLTTLYKKIEKAEFSCPPWFHVGAKSLIHRILDPNPEHRITIQQIRNDEWFQKGYVPVSLLEYEDVNLDDVNAAFDNAEDQRANQQCENESRGPLILNAFDLIILSEGLNLATLFDSRQDSTKYQKRFITQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKTSYISVMLEVFEVAPTFFLVDIQKAAGDAGEYLEFHKNFCSNLEDIIWKPPHETSKLRISKTKSKRQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1942g00010 446 Coils Coil 279 299 - -
Gabi1942g00010 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1942g00010 446 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Gabi1942g00010 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 415 - -
Gabi1942g00010 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Gabi1942g00010 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Gabi1942g00010 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Gabi1942g00010 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Gabi1942g00010 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Gabi1942g00010 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Gabi1942g00010 446 Gene3D Transferase(Phosphotransferase) domain 1 4 306 - -
Gabi1942g00010 446 CDD CIPK_C 309 424 - -
Gabi1942g00010 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gabi1942g00010 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1942g00010 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1942g00010 446 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1942g00010 Gabi-Chr1942 119628 125426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1942g00010 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 81.701 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi1942g00010 Pkinase 6.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1942g00010 - - gmx:100785444 816.224