Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1942g00008 ATGGAGAACTACTCCCATTCTTCCCACCCGGATTCCCTCGATTCCTCACCTCGTTCCCGCGAGGTGGAAAACGAGAACACCTCCTTCGACGAACCCCCTCCCTCCAACACCACCTACAAAGTCAAGCTCGTGTGCAGCTATGGCGGAAAAATCCAACCTAGGCCCCACGACAACCAGCTCGCATACGTCGGCGGCGACACCAAGATCATCGCCGTCGATCGCAACATCAAATTCTCTGCAATCATGGCCAAGCTCTCTGCGCTCATCAACGCCGACGTTTGCTTCAAGTACCAACTCCCCGGCGAAGAGCTCGACAACTTGATCTCCCTCATCAACGAGGAGGATCTCGACCACATGATGGACGAGTACGATCGCCTGTGCCGCGCCTCACCTAAGCCAGCAAGACTGAGGTTGTTCCTCTTCCCTCTTAACAATGCTTCTTCTGCCCCGAAAATCGATCTCGAACCCACCGAATCGAAACCGGAGCAGCAGTGGTTCGTGGATGCTCTTAACTCCGTGCAGAATATTCCGCCTCTAGAAGGTTCTTCTCCACCGCCACCAATGCAGCCGGCTAATCCTGATTTTCTGTTTGGATTGGATAACGCGTATCCCGCGGTTCCGGCGGCGAAAGCGCAGGAATTTGCGGAAACTGTTCCGACTGTTCCGGAAATTGCGGCGGGATCGGAGTGCGGGTCCGAGGATCCGCAAGCGGTTAGAGAACCGGAGATCCAAGAGCAACAGTGGTTGCAGAATGGGAACAACGAGCAACTTCTGCAACGGAAAATCGAGGAAGAGAATAGCAGAGTTTACGGCGTGGACTGTTACCCTCAGAAAAATCCGGAGAATGTGGCGCCGTTAATGGCACATGCACATGCACATGCTCATGCTCATGCTCATGCTCAAGTCAACTCCGGTCCGCTTACTGTTCCTGGACCGGTATCGGTCCAGGCATCCTTTTTGCAGGAAAGGCATAACCAGGGAGGTGGCTATTCCGAGCAGCAGCCGGTTTATCTCATCCAAACACCTTCTGGTATGTACCAAGCCGTGCGGCCCGTGACTGGACCAATGGGTCAACCGGTGTATCTCATTCAAACACCGGTTTCGCTTTCGCACTCGCATTCAGCTAACAATATTGCTTACAATGGTTCAGAGGTTGGGGGAATGTCTGAGCGTGGATATTCGCAGGTTGCGTACTTACCTGAAAGGTCTGGTTTGCGGCGACAGGCTGCGGCGGCGCCCGGCGGTGAAGGCTGGAATTGA 1260 0.5429 MENYSHSSHPDSLDSSPRSREVENENTSFDEPPPSNTTYKVKLVCSYGGKIQPRPHDNQLAYVGGDTKIIAVDRNIKFSAIMAKLSALINADVCFKYQLPGEELDNLISLINEEDLDHMMDEYDRLCRASPKPARLRLFLFPLNNASSAPKIDLEPTESKPEQQWFVDALNSVQNIPPLEGSSPPPPMQPANPDFLFGLDNAYPAVPAAKAQEFAETVPTVPEIAAGSECGSEDPQAVREPEIQEQQWLQNGNNEQLLQRKIEEENSRVYGVDCYPQKNPENVAPLMAHAHAHAHAHAHAQVNSGPLTVPGPVSVQASFLQERHNQGGGYSEQQPVYLIQTPSGMYQAVRPVTGPMGQPVYLIQTPVSLSHSHSANNIAYNGSEVGGMSERGYSQVAYLPERSGLRRQAAAAPGGEGWN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1942g00008 419 Gene3D - 61 142 - -
Gabi1942g00008 419 MobiDBLite consensus disorder prediction 13 27 - -
Gabi1942g00008 419 SUPERFAMILY CAD & PB1 domains 56 147 - -
Gabi1942g00008 419 SMART PB1_new 55 143 IPR000270 GO:0005515
Gabi1942g00008 419 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 60 143 - -
Gabi1942g00008 419 CDD PB1_UP2 44 141 - -
Gabi1942g00008 419 PANTHER OS05G0427100 PROTEIN-RELATED 9 343 - -
Gabi1942g00008 419 MobiDBLite consensus disorder prediction 1 35 - -
Gabi1942g00008 419 Pfam PB1 domain 56 142 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1942g00008 Gabi-Chr1942 107763 109406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1942g00008 39 267 MAP Kinase Kinase Kinase AT5G57610 33.191 2.17e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1942g00008 - - pcin:129294124 403.29