Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1942g00004 ATGGAGCTCTATGACCATGATTTCTTGGAGGAGTTACTGGCTCTAAGAAGAGAAACATGGGACACCAATCCAAGTTCAGAAGAAAACCAGCACTTCTCTAATGGGTGGAGTTTTGACTGTTTAGATCAAAACTCTCATGCTTTTCTTCCAAATTCTTCCACTTGCCAAGAAGTTCCTCAAAGTTATAACAACGACTACTCTTTCAATGAAATCTATAGTTCCTTACTCGATGAATCCTATGCAGCACAGTTTACTGATTCTTCCTATAACACTCTTCATACTCCTCTTAATACCCCTCCATTTCTAGCTCAAGAAGATAACCCATTGTCCATGATGGAAGACGAGGATCCTGGTTTGCTTGGGGAAGAGCTTCATAATTTGAACCTTCAAACCACATGCAAAATGGAGCCTAGCCAATCCCCTGAAATAATGCCTGCTTTCAACAAGGGTAAGTGTCTTGAAAGAAGGAATAGAGCAAAGAAGCTGCAGGGGCAACCCTCCAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGAGATTGAACGACAGGCTCTCCATGCTAAGATCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATACTAGGAGACACTATCGATTACATGAAAGAACTCTTGGGGAAGATCAATAATTTGAAACAAGAAATAGAAGTAGATTCAAACATGGCTGGCATTTTCAATGATTTAAAGCCAAACGAAATCTTAATGAGAAATTCTCCTAAGTTTGATGTGGAGAGAAGGAATGTCAACACAAGGGTTGAGATCTGCTGTTCAGGGAAGCCAGGCTTGTTGCTATCTACAGTAAAGACCTTGGAAGCATTAGGCATTGAGATCCAACATTGTGTTGTTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGATTTGGAGCAGAAGACAATTCTGAGTTCTGAAGATATAAAACAAGCACTATTTAGAAGCGCAGGATATGCAGGAAGATGTTTGTGA 1002 0.4012 MELYDHDFLEELLALRRETWDTNPSSEENQHFSNGWSFDCLDQNSHAFLPNSSTCQEVPQSYNNDYSFNEIYSSLLDESYAAQFTDSSYNTLHTPLNTPPFLAQEDNPLSMMEDEDPGLLGEELHNLNLQTTCKMEPSQSPEIMPAFNKGKCLERRNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLGKINNLKQEIEVDSNMAGIFNDLKPNEILMRNSPKFDVERRNVNTRVEICCSGKPGLLLSTVKTLEALGIEIQHCVVSCFNDFTMQASCSEDLEQKTILSSEDIKQALFRSAGYAGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1942g00004 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 32 328 - -
Gabi1942g00004 333 CDD ACT_UUR-ACR-like 259 300 - -
Gabi1942g00004 333 Coils Coil 210 230 - -
Gabi1942g00004 333 SMART finulus 170 219 IPR011598 GO:0046983
Gabi1942g00004 333 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Gabi1942g00004 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Gabi1942g00004 333 Gene3D - 154 228 IPR036638 GO:0046983
Gabi1942g00004 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1942g00004 Gabi-Chr1942 58237 59604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1942g00004 155 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.000 8.77e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1942g00004 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1942g00004 - - gmx:100814388 527.709