Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1942g00002 ATGTCTCGGCCGCTGCTGAGCATGGGGGATGAGGAATGTCAAAGCAATGTCACTTCTTTGGTTTCTTCCTCAGCCACCATGGAAAGTGTTTGTCTGAATAGCTCAAAATTAAAAGAGCACAACTACATGGGATTATCTGATTGTTCATCTGTGGACAGTTCAGTTCCATCCTTCTCAGATGAGAGTAAAAGTAATCTGAACCTTAAAGCTACTGAGCTCAGACTGGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCAGATCTTTGCTTGACAAGTTCAACTCAATTTGATGAAAAACCACTGTTTCCTTCAAAGCCTGCTGTTTTGGGTAACAAAAGAGGGTATTCAGATGCCATTAATGGATTCTCAGAGGATAAATTGCTTGTTAGATCGGAGGTCAACGCGATGTTGAAACCTAGCTCTGTGCTTGAGAATGTTGGGGCTCAACAAGCCAAAGCCAAGGAAGTAGCAACAGCGAAGGTTAGTCTTGAGAGGCCTCATGCTGTCAATGAAAGCAGACCAAGTCTTAATGGTTCTGCAAATAATCATAGTAGTGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGACTACTACTTCAAAGAATATTGAAGAAGTAGTTGGAAAAGTGGGTTCTGGGGCATTGTTTGTGAAGGTCAGTATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACACTGCATATACAGAACTATCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATGTGGATCTCATGGAAATATGGGCGGGGAGATGCTGAATGAATCCAAGCTGAAGGATCTCCTTCATGGGTCAGAATATGTTCTTACTTATGAGGATAAAGAGGGCGACTGGATGCTCGTGGGTGATGTACCCTGGGAGATGTTTATTGAGACATGCAAGAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGATTAGCGCCTAGATCTGTTGAAAAGAGTATGAGCAGAAACTAG 1041 0.4294 MSRPLLSMGDEECQSNVTSLVSSSATMESVCLNSSKLKEHNYMGLSDCSSVDSSVPSFSDESKSNLNLKATELRLGLPGSQSPERDSDLCLTSSTQFDEKPLFPSKPAVLGNKRGYSDAINGFSEDKLLVRSEVNAMLKPSSVLENVGAQQAKAKEVATAKVSLERPHAVNESRPSLNGSANNHSSAPATKAQVVGWPPIRSFRKNSLTTTSKNIEEVVGKVGSGALFVKVSMDGAPYLRKVDLKNYTAYTELSSALEKMFSCFTIGQCGSHGNMGGEMLNESKLKDLLHGSEYVLTYEDKEGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRSVEKSMSRN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1942g00002 346 MobiDBLite consensus disorder prediction 173 190 - -
Gabi1942g00002 346 SUPERFAMILY CAD & PB1 domains 223 327 - -
Gabi1942g00002 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 333 IPR003311 GO:0005634|GO:0006355
Gabi1942g00002 346 FunFam Auxin-responsive protein 221 338 - -
Gabi1942g00002 346 Gene3D - 221 340 - -
Gabi1942g00002 346 ProSiteProfiles PB1 domain profile. 226 328 IPR000270 GO:0005515
Gabi1942g00002 346 MobiDBLite consensus disorder prediction 162 191 - -
Gabi1942g00002 346 Pfam AUX/IAA family 71 337 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1942g00002 Gabi-Chr1942 24226 28622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1942g00002 230 336 B3 DNA Binding Superfamily AT4G23980 30.841 4.93e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1942g00002 AUX_IAA 8.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1942g00002 K14484 - gmx:100815447 555.444