Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1940g00018 ATGGCCGAAAGGAGTGTTTCTTCCATAGCTTTACCATTGCTAATCATTTACATCATTTCAATCTTCGTGGTTTCTATTACTTGTTTTCAAGAAGAGCGATCATTATACTTAGTCTTATTGGAAGGAGACGCGGTTGCTTTCCATGAAGGTTCATGGGACGAACATTCATCAAGAATTGACCCCAACAGCGAAGCCTCTAAGGCGCATGCAAAGAACTTGTTGGCATCTCACGATCTACTTCTGCAAAGCGCTTTAGAGAATGGAAGCTACAATAAACTCCACAGTTTCAAACACCTCATTAATGGCTTTTCCGTCCACACAACCCATTCCCAGGCTAAAAGACTGAAAGGTGTCCCAGGGGTGAAGTTGGTAGAGAAAGACAGAGGAGCGAAAGTGATGACAACGTACACTCCTGAGTTTCTAAGTTTACCAACAGGAATATGGGCGCAGGAAGGAGGAGACAGAAACGCAGGTGATGGAGTTGTCATTGGTTTTGTCGATAGCGGTATCAATCCACTTCATCCAAGCTTTGCTTATGATCCCATGCAACCTTTCACATCAAATCTCTCTCATTTTGAGGGTGCCTGTGAGAGTGGTCCACTCTTCCCAGCTAGTTCTTGCAATGGAAAGATAGTTTCAGCGAGGTACTTCTCAGCTGGGGCTGAAGCTGTTGCTACCCTTAATGCTTCAGTGGATTTTCTTTCACCATTTGATGCAGAGGGACATGGCAGTCACGTGGCATCTACTGCTGCTGGAAATGCTGGTGTTCCTGTTGTTGTGAACGGTTTTTTCCATGGTCTAGCAAGCGGAATGGCACCGCGTGCAAGGATTGCTGTTTATAAGGCTGTCTATCCATCCGTGGGAACTCTGGCAGATGTTATTGCAGCTATCGATCAGGCCGTCCAGGATGGGGTGGATATCTTAACACTCTCAGTTGGACCTGATGAACCGCCAAAAGACACATTAACCTTCTTCAGCCTGTTTGATATTTCACTATTATTTGCACGAAAAGCAGGAGTTTTTGTGGTGCAAGCTGCAGGGAATAAGGGTCCATCACCTTCAACTTTAGTGTCATTCAGTCCCTGGAGTGTGAGTGTTGCTGCCTGCAGCACAGACAGAAGGTACCCTGCTTCACTTCTTCTTGGAAATGGCCAAATACTAAATGGCGTGGGAATGTCAGGACCAAGTTTTGGAAATGGATCAGTTTTGCATAAGCTCGTATTAGCTAAGGATGCAGTAAAAACAAACGGAACATTCCCTAGGACTCCAGAGTACATAGACGAGTGCCAACATCCTGAAGTTTTGGACCCTCACATAGTGTTAGAAAGTGTCATTATCTGCACTTTCTCAGCGGGCTTCTATAATGGAACCTCAACACTCGCTGCCATTATTGACACATCAAAGGCTCTAGGATTCATGGGTTTTATTCTAGCTGCGAACCCAAGCTATGGTGATTATATTGCACAACCAATACCTTTTTCTGTTTCTGGTATTATGATCCCTAGTGTGGCTGATGCCAAGGTGATATCACAGTATTATGAAGAACAAACCAAGAGGGATGAGAGAGGAACTGCCACAGAATTTGGTGCTAGGGCAGGTGTCGGGGAAGGAAGATTTGCTTCTTTCACAGGGCGATCTCCCGTAGTCAGTAGATTTTCTTCAAGGGGTCCAGATATCATTGACATGAACAGAAACCTTGCTGATGTACTTAAACCTGATATTCTTGCTCCAGGGCATCAAATATGGGCAGCCTGGAGCCCCATGAGTGCCTTACAACCCATGCTAAAAGGGCACAATTTTGCATTATTATCTGGTACCAGCATGGCCACACCTCATGTGGCTGGAATCGCAGCACTTATTAAGCAATATAATCCATTATGGACTCCATCCATGATAGCATCTGCAATCACCACAACTAGCACAAAGTATGATAATCTTGGAGAGCATATGATGGCTGAAGGCTTTGAGATCAACGGCTTGCATCCCGCCACTCCTTTTGAATATGGGGCAGGCATTGTGAATCCTAAGGGTGCAAATGATCCAGGCTTGGTACTATCATCAGGATATGCAAATTTCATCAGCTTCTTGTGCTCTTTGCCAAACATAGATGCGACTACAATAATTGAAGCCACTGGAGAACAGTGCAATAACGCGTTTGCCTATCCATCCGATCTAAACCTTCCTTCAGTAACAATATCTGCACTGAGAGGATCAGTTTGTGTGCGACGAACTGTCATGAATGTGGGGAACCACACAGAGACATTCTTAGGCTCTGTTCTACCTCCTAATGGAACTACAGTCAACCTGTATCCAACTTGGTTTACCATAAGTCCACAAGGAACACAACATCTGGAAATACAACTCAGTGTCATCCAACCAATGGAGAATTTCAGCTTTGGTGAAATTGTTTTGATAGGAAATTTGAACCACATTGTAAGAATAACATTGTCAGTTTTACCAGTTTCGGTATATTGA 2475 0.4428 MAERSVSSIALPLLIIYIISIFVVSITCFQEERSLYLVLLEGDAVAFHEGSWDEHSSRIDPNSEASKAHAKNLLASHDLLLQSALENGSYNKLHSFKHLINGFSVHTTHSQAKRLKGVPGVKLVEKDRGAKVMTTYTPEFLSLPTGIWAQEGGDRNAGDGVVIGFVDSGINPLHPSFAYDPMQPFTSNLSHFEGACESGPLFPASSCNGKIVSARYFSAGAEAVATLNASVDFLSPFDAEGHGSHVASTAAGNAGVPVVVNGFFHGLASGMAPRARIAVYKAVYPSVGTLADVIAAIDQAVQDGVDILTLSVGPDEPPKDTLTFFSLFDISLLFARKAGVFVVQAAGNKGPSPSTLVSFSPWSVSVAACSTDRRYPASLLLGNGQILNGVGMSGPSFGNGSVLHKLVLAKDAVKTNGTFPRTPEYIDECQHPEVLDPHIVLESVIICTFSAGFYNGTSTLAAIIDTSKALGFMGFILAANPSYGDYIAQPIPFSVSGIMIPSVADAKVISQYYEEQTKRDERGTATEFGARAGVGEGRFASFTGRSPVVSRFSSRGPDIIDMNRNLADVLKPDILAPGHQIWAAWSPMSALQPMLKGHNFALLSGTSMATPHVAGIAALIKQYNPLWTPSMIASAITTTSTKYDNLGEHMMAEGFEINGLHPATPFEYGAGIVNPKGANDPGLVLSSGYANFISFLCSLPNIDATTIIEATGEQCNNAFAYPSDLNLPSVTISALRGSVCVRRTVMNVGNHTETFLGSVLPPNGTTVNLYPTWFTISPQGTQHLEIQLSVIQPMENFSFGEIVLIGNLNHIVRITLSVLPVSVY 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1940g00018 824 Gene3D Peptidase S8/S53 domain 160 691 IPR036852 GO:0004252|GO:0006508
Gabi1940g00018 824 Pfam Fibronectin type-III domain 724 818 IPR041469 -
Gabi1940g00018 824 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 25 132 IPR037045 -
Gabi1940g00018 824 ProSiteProfiles Serine proteases, subtilase domain profile. 135 679 - -
Gabi1940g00018 824 Pfam Subtilase family 158 645 IPR000209 GO:0006508|GO:0008236
Gabi1940g00018 824 Gene3D - 696 819 - -
Gabi1940g00018 824 ProSitePatterns Serine proteases, subtilase family, serine active site. 605 615 IPR023828 -
Gabi1940g00018 824 Gene3D - 372 542 - -
Gabi1940g00018 824 SUPERFAMILY Protease propeptides/inhibitors 90 129 - -
Gabi1940g00018 824 CDD PA_subtilisin_like 378 513 - -
Gabi1940g00018 824 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 163 174 IPR023827 -
Gabi1940g00018 824 CDD Peptidases_S8_3 131 641 IPR034197 -
Gabi1940g00018 824 Pfam Peptidase inhibitor I9 68 128 IPR010259 -
Gabi1940g00018 824 SUPERFAMILY Subtilisin-like 133 683 IPR036852 GO:0004252|GO:0006508
Gabi1940g00018 824 ProSitePatterns Serine proteases, subtilase family, histidine active site. 242 252 IPR022398 -
Gabi1940g00018 824 PRINTS Subtilisin serine protease family (S8) signature 604 620 IPR015500 -
Gabi1940g00018 824 PRINTS Subtilisin serine protease family (S8) signature 238 251 IPR015500 -
Gabi1940g00018 824 PRINTS Subtilisin serine protease family (S8) signature 158 177 IPR015500 -
Gabi1940g00018 824 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 87 816 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1940g00018 Gabi-Chr1940 219203 224370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1940g00018 4 818 Subtilisin-like Serine Gene Family AT1G62340 59.544 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1940g00018 - - gmx:100798915 1303.12