Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1940g00017 ATGGAGGGTAATTCTAATGGCACTTCAAGTGTGATGGCTTTTGGAGAGAACAGTAATGGGATTTGTCCAATGATGATGATGATGCCTTTAATGACTTCTCATCATCCAATAAATCCTAATCACAATAATCCTAATGTAGATACGAACGGTCTTTTTCTTCCCATGCCTTGCACTACTAATAATCACCACCCTAACCGCGATAGTAGTGGCAGCTCCTCAATCATGCTCCACAATAACCACAACACCAACAACACTGAGTTAGGGTATTTCATGCAGATCGACCCCAACAACAACAACAACAACAACACCAACGGTGGAAGCTCATCTTCTTCTTCCACTGTCAAGACCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGACTGCTTACGTCAATTGTCAAAAGGTTGGAGCTCCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCAGGGACAATGGCGGGTGAACCAGCTGGGAAAGCCTTCATCGGTGAGGATCCTGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCGAAACCTTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTGCAATTTCTTCTTCGGACTTTGCTGGTAATGAAGATACTGATAGGAATGGATCATATGAAGAAGGTGTTGATCTTCAGAAAAACATAATAGATCCTCAGGCAGAGGACCAGGAATTGAAGGGTCAACTTTTACGCAAGTACAGTGGATACCTAGGCAGTTTGAAGCAGGAATTCATGAAGAAGAGAAAAAAAGGAAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTTGCAGAGTCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGATATGCAATTTGTGGTGGTGGATCCCAGCCATCCACATTATTATATGAACAATGTTCTGGGAAATCCTTTTCCCATGGATTTCTCCCACACAATGATCTGA 1107 0.4399 MEGNSNGTSSVMAFGENSNGICPMMMMMPLMTSHHPINPNHNNPNVDTNGLFLPMPCTTNNHHPNRDSSGSSSIMLHNNHNTNNTELGYFMQIDPNNNNNNNTNGGSSSSSSTVKTKIMAHPHYHRLLTAYVNCQKVGAPPEVVARLEEACASAGTMAGEPAGKAFIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLAISSSDFAGNEDTDRNGSYEEGVDLQKNIIDPQAEDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMNNVLGNPFPMDFSHTMI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1940g00017 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 339 - -
Gabi1940g00017 368 FunFam Homeobox protein knotted-1-like 2 275 337 - -
Gabi1940g00017 368 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Gabi1940g00017 368 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
Gabi1940g00017 368 SUPERFAMILY Homeodomain-like 272 348 IPR009057 -
Gabi1940g00017 368 SMART ELK_2 250 271 IPR005539 GO:0003677
Gabi1940g00017 368 Gene3D - 275 337 - -
Gabi1940g00017 368 Pfam KNOX1 domain 113 152 IPR005540 GO:0003677|GO:0005634
Gabi1940g00017 368 MobiDBLite consensus disorder prediction 92 113 - -
Gabi1940g00017 368 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Gabi1940g00017 368 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Gabi1940g00017 368 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Gabi1940g00017 368 SMART HOX_1 272 337 IPR001356 GO:0003677
Gabi1940g00017 368 CDD homeodomain 282 334 IPR001356 GO:0003677
Gabi1940g00017 368 Pfam KNOX2 domain 167 212 IPR005541 GO:0003677|GO:0005634
Gabi1940g00017 368 Pfam ELK domain 250 271 IPR005539 GO:0003677
Gabi1940g00017 368 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1940g00017 Gabi-Chr1940 206372 210787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1940g00017 114 368 Homeobox Transcription Factor Family AT1G62360 79.008 3.03e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi1940g00017 KNOX2 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1940g00017 - - gmx:100127401 528.865