Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1940g00008 ATGTACAGAAAGATGACACAACCATTTTTGTTCCTTAAAAAACATAGCCATTCATCAACAACGTTGCCAATGGGTGCAGACATGTCCAACAATCCACCTCCTACTTCTCATGCCAAAGACTTCTTTGCCTCTCCAGCTCTCTCTCTAAGCCTTGCTGGAATTTTTCGCCATGCCGGGGTGGCGGCGGAGGCTGAGGTGGGAACTTCGGTGGAGGAGGGCGACGAGGGAAGTGGAGGAGGTGAGCGGCGAGATGACACAGTTGAGATTAGCAGCGAGAACTCTGGTCCCACGAGATCAAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACATGACGAGGATGATGATGGTGATGGGGATAAGAACAAGAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACCGCTGAGCAAATCAGAGAAATGGAAACGCTTTTCAAAGAGTCCCCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGACAGAAATAGACAAACTAAAGGAGAAAAATAAGACCTTGCGAGATACCATAAACAGGGCATGTTGCCCCAACTGTGGTGTGGCCACAACAAGCAGAGATGGTGCCATGCCAACTGAAGAACAACAACTCCGAATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCAGAACAACTTTAGGGAAATACGCACCAGGTACAATGTCCCCTTCATGTTCTGCAGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGTCTTGATAAGTCAAGGATAATGGATATAGTAAACCAAGCAATGGATGAGCTCATAAAGATGGCTACAGTAGGGGAACCATTATGGCTTCGTAGCTTTGAGACTGGTCGAGAAATTCTTAACTATGATGAATACATGAAGGAGTTCACAGTTGAAAATTCAAACAATGGAAGGCCAAAGAGATCCATCGAAGCCTCAAGAGAGACTGGTGTTGTTTTTGTTGATCTCTCTCGGCTTGTCCAAAGTTTTCTAGATGCTAATCAATGGAAGGAGATGTTTCCATGTTTAATAACTAAGGCGGCAACTGTTGATATTATATGCAATGGAGAAGGTTCTAACAGGAATGGCGCAGTGCAACTGATGTTTGCTGAGGTGCAAATGCTCACACCAATGGTGCCCACAAGAGAAGTGTATTTTGTCAGGTACTGCAAACAGTTGAGTGCTGAACAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATCGACGCATCCCTCGTGAAATGCAGAAAACGCCCATCAGGTTGCATTATTGAAGACAATTCGAATGGTCATTGCAAAGTAATCTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAGTCCATACAATGTATCGCACCATTGTCAACAGTGGTCTAGCCTTTGGGGCAAGGCACTGGATTGCAACACTGCAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTCTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCGTCAAGTTTCCATACATGGACTAAGGTTACAAGCAAAACAGGAGAAGACATAAGGATTAGTTCTAGAAAGAACTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGCGCAGTTTCTTCTGTATGGTTACCTGTTTCTCCTAATGTTCTATTTGATTTCTTGAGGGATGAAGCTCGCAGAACTGAGTGGGATATCATGTCCAGTGGTGGATCAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACAGAGGCAATGCTGTAACCATCCAAACAATTAAATCTCAAGAAAATAGTATGTGGATACTGCAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAATCTTGCCATTCTTCCATCTGGATTCTCAATTGTTCCTGATGGTCTCGAGTCAAGGCCAATGGTCATTACTTCAAGGCAGGAAGAAAAGAATACAGAGGGAGGATCTTTATTTACAATAGCATTCCAGATCCTTACTAATGCTTCTCCTACAGCCAAGTTAACAGTTGAGTCTGTGGACTCGGTCAACACTCTTTTGTCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGCGAAGATGGTTAG 2346 0.4344 MYRKMTQPFLFLKKHSHSSTTLPMGADMSNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAAEAEVGTSVEEGDEGSGGGERRDDTVEISSENSGPTRSRSEDDFEGEGEHDEDDDGDGDKNKKKKKRKKYHRHTAEQIREMETLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIDKLKEKNKTLRDTINRACCPNCGVATTSRDGAMPTEEQQLRIENAKLKAEVEKLRTTLGKYAPGTMSPSCSAGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMDELIKMATVGEPLWLRSFETGREILNYDEYMKEFTVENSNNGRPKRSIEASRETGVVFVDLSRLVQSFLDANQWKEMFPCLITKAATVDIICNGEGSNRNGAVQLMFAEVQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDNSNGHCKVIWVEHLECQKSTVHTMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDEARRTEWDIMSSGGSVQSIANLSKGQDRGNAVTIQTIKSQENSMWILQDSCTNPYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVPDGLESRPMVITSRQEEKNTEGGSLFTIAFQILTNASPTAKLTVESVDSVNTLLSCTLRNIRTSLQCEDG 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1940g00008 781 MobiDBLite consensus disorder prediction 19 39 - -
Gabi1940g00008 781 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Gabi1940g00008 781 CDD homeodomain 132 183 IPR001356 GO:0003677
Gabi1940g00008 781 SUPERFAMILY Homeodomain-like 117 186 IPR009057 -
Gabi1940g00008 781 CDD START_ArGLABRA2_like 291 519 - -
Gabi1940g00008 781 ProSiteProfiles START domain profile. 287 523 IPR002913 GO:0008289
Gabi1940g00008 781 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Gabi1940g00008 781 MobiDBLite consensus disorder prediction 62 138 - -
Gabi1940g00008 781 Gene3D - 325 516 IPR023393 -
Gabi1940g00008 781 SMART START_1 296 520 IPR002913 GO:0008289
Gabi1940g00008 781 Pfam Homeodomain 128 183 IPR001356 GO:0003677
Gabi1940g00008 781 Coils Coil 235 255 - -
Gabi1940g00008 781 FunFam Homeobox-leucine zipper protein HDG1 113 201 - -
Gabi1940g00008 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 124 776 IPR042160 -
Gabi1940g00008 781 SUPERFAMILY Bet v1-like 289 520 - -
Gabi1940g00008 781 MobiDBLite consensus disorder prediction 75 89 - -
Gabi1940g00008 781 Pfam START domain 298 520 IPR002913 GO:0008289
Gabi1940g00008 781 Coils Coil 184 211 - -
Gabi1940g00008 781 SMART HOX_1 127 189 IPR001356 GO:0003677
Gabi1940g00008 781 FunFam Homeobox-leucine zipper protein GLABRA 2 296 519 - -
Gabi1940g00008 781 Gene3D - 115 197 - -
Gabi1940g00008 781 SUPERFAMILY Bet v1-like 542 714 - -
Gabi1940g00008 781 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1940g00008 Gabi-Chr1940 93392 104604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1940g00008 89 780 Homeobox Transcription Factor Family AT1G79840 65.954 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1940g00008 START 1.6e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1940g00008 K09338 - gmx:100809926 1304.66