Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1940g00001 ATGATGGCAGGGAACCCTAACTGGTGGAGCATGCATCTACCATCTTTGAGCCCTTCCCAATATGTGCTTGGATCTTCTTCAATTCCTTTTAACTCTTTGACAGAAAATCCAGAGCCTCCTCAGTCATGGAGCCAACTGCTTTTCACTGGATTACCGCGGGAAGAAGAGAGAATGGGTTTCAATCATTTTCAACCAAAAAAGTTGGAAAACTGGGATGGCCAAATACATAATCCATCTTCAAGAGTTCCTATTCATGATGTAATAAAGCAAGAAGTTTCCCGAAGTGGCAATTTGTTTGGCCATGGGAGTGAGGAATTTCAGGCTTCTGGGTCATCTTGGTCACATATGGTGCCAGTTTCTTCCCCTAGGTCCTGTGTCACTAACTTGAGTAGTAATAACATATTGGATTTCTCTTATAACAAAGCAGATCATAGGAAGAATCAACTACCTGCAGATCTAACATCTGAGTGTAATAGCACATCCACTGTTGGAGTGTGTAATAAGAAGGCTAGGGTTCAACCATCTTCAAGCCAACCACCTCTGAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAACAGCTCTTCACCAGTTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATCAAATTCCTGCAGGGTCAAATTGAGGCACTCAGCTCTCCTTACTTGGACAATGCATCAAAAAACATGAGGAATCAACAGTATGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGAACCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGTTGCAGAAGAAAAACCAAAGGATTTGAGGAGTAGAGGGTTGTGCTTAGTCCCTGTGTCTTGCACTCACCATGTTGGAAGCGAAAATGGGGCTGATTACTGGGCACCTGCATACGGCAGTGGATTTTAA 954 0.435 MMAGNPNWWSMHLPSLSPSQYVLGSSSIPFNSLTENPEPPQSWSQLLFTGLPREEERMGFNHFQPKKLENWDGQIHNPSSRVPIHDVIKQEVSRSGNLFGHGSEEFQASGSSWSHMVPVSSPRSCVTNLSSNNILDFSYNKADHRKNQLPADLTSECNSTSTVGVCNKKARVQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIKFLQGQIEALSSPYLDNASKNMRNQQYVHGERNSVFPEEPGQLLNDNGLKRKGAPNQVAEEKPKDLRSRGLCLVPVSCTHHVGSENGADYWAPAYGSGF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1940g00001 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 233 IPR036638 GO:0046983
Gabi1940g00001 317 Gene3D - 182 246 IPR036638 GO:0046983
Gabi1940g00001 317 FunFam Transcription factor bHLH123 family 182 245 - -
Gabi1940g00001 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Gabi1940g00001 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 299 - -
Gabi1940g00001 317 CDD bHLH_AtbHLH_like 182 229 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1940g00001 Gabi-Chr1940 20848 24466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1940g00001 33 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.489 1.50e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1940g00001 - - gmx:100802121 509.605