Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi193g00003 ATGGCTGATCCAAGGTTCAATGTTCCTTTTCATGAGTCATCATTTGACGCTCCACCTTCCCCAAACTTTTTCGATTTCGATTTGTCCAATACTTCACTGCCCCAATTACAACAAACTCATCAACATGATGGATTTCAACAGGGTGGTAGTAATAATGATGATGATCATCATAACTATTCTGAATTTGATCCAATGATTCAAGATCACACTGTTCACAATAGTAGTTTCCACTATGGTGGAGGAGGAGGGAACTTTGAAGCGGGTGGTTCATCATCACAAATGCATGGGGTTGGGGTTCAAAGTCAACATGCAAATGAGAATTTAGGAGGGGGTTCACAGATTCCTAACAATCAAGTGCTCACACTTGAGTATTGGCCCGTGCCACCAGCCCCATTTTTTTGTAGTTGCTGTCATGTTCTTAGAGAAATTGTTCATACTAATGGTATTAAGTTCGAAAAGCTTGAGATTCACGGAAGGCTCGGGATTATTAGCCATGTAATTCACCATAAGAATATCAGCAGGGGTTCTTCAAGCAACCCTCAATATGAAATGATTGATTTTTCCCAGAGAAACATTGAAGAAGTGAAGCAATTCCTAATCCAGTATTGTATGGGGCAAAGTTCAGCAGGCTACTTTATTATGCAAGATCCGATGTCTGTCTATTATGATGCCCTCTGCACTGGACTGGATTGGACGGAAGATATAAATGATGACTTTGTTGATTTGAATCCAACAGCATCAATTGCTGATGACACGGAACAAGAAGCTGACAATGAAAGGGCTGCTAAATTACCCATATCAGCACAGAGGGAGAGAGCCGCAAAGATGCAATTGAGTGATTTAAGCGATTACTTTCATCTACCTATTGATGAAGCAGCAAGGAAAGTGAATTTATCTGCCACTGTTGTGAAGAAAATTTGCCGTAAGGCAGGATTAGCACGATGGCCTCACAGAAAGGTCAAAAGCGTTTGGAAGCAAATCACAATACTCAGAAGAACAATATTAGAATCAGAAGATGAAGAGTCAAGGGAAAACACTCAAGCGGAAATTAACAGACTTGAACTAGATATGATCCAGCATTGTGGTGGAATTGCACCAACTGCATTAAATCTTGAAAACTTGGACATATAG 1131 0.4032 MADPRFNVPFHESSFDAPPSPNFFDFDLSNTSLPQLQQTHQHDGFQQGGSNNDDDHHNYSEFDPMIQDHTVHNSSFHYGGGGGNFEAGGSSSQMHGVGVQSQHANENLGGGSQIPNNQVLTLEYWPVPPAPFFCSCCHVLREIVHTNGIKFEKLEIHGRLGIISHVIHHKNISRGSSSNPQYEMIDFSQRNIEEVKQFLIQYCMGQSSAGYFIMQDPMSVYYDALCTGLDWTEDINDDFVDLNPTASIADDTEQEADNERAAKLPISAQRERAAKMQLSDLSDYFHLPIDEAARKVNLSATVVKKICRKAGLARWPHRKVKSVWKQITILRRTILESEDEESRENTQAEINRLELDMIQHCGGIAPTALNLENLDI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi193g00003 376 MobiDBLite consensus disorder prediction 37 58 - -
Gabi193g00003 376 Coils Coil 336 356 - -
Gabi193g00003 376 MobiDBLite consensus disorder prediction 37 53 - -
Gabi193g00003 376 ProSiteProfiles RWP-RK domain profile. 254 343 IPR003035 -
Gabi193g00003 376 PANTHER PROTEIN RKD4 83 355 IPR044607 GO:0003700
Gabi193g00003 376 MobiDBLite consensus disorder prediction 1 23 - -
Gabi193g00003 376 Pfam RWP-RK domain 276 323 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi193g00003 Gabi-Chr193 44711 46947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi193g00003 275 338 AtRKD Transcription Factor Family AT5G53040 42.188 4.44e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi193g00003 RWP-RK 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi193g00003 - - aprc:113850591 350.903