Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi193g00002 ATGACTTACAATTGCAACCGGCAAAATAAGCATCCTATCCACACTCCAATCCTCTTCTTCAAGATTATTCTTAGAACAAGTCTTCAAGATGGAAAGCTTAAACTCCCAAACAATTTCACTAAGAAATATGGTGGTGATATGCCAAACCCAATGTTTCTCAAGCCTGAAGATGGCACTGAATGGGAATTATTTTGGACTAAAAATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAGGAATTTTCTACGTATTACTCACTAGATCATGGTCATATGGTGTTGTTTGAATACAAGCACACTTCTCATTTTGATGTACGCATATTTGACAAGAGTACCCTTGAAATAAATTATCCTTTCCATTGCACTCAAGATGAACGGGATAACCTTGACCAGATTAGTGATGATCACTCAGTTAAAATTTCGGATGAGCTACCACCATGCCATAAGAATACACAGAAATCACCAATGTCTTCTCCTCAACCATGTAAGAAATTGAGAACTTGCACAAGTAATGTTGAAAGAAGCTCTACTTTGCAAATTGAAGGTACAATCTTGGAGAAGTCTAAATTTGCATCTGTAAAGAAAGAACCGGATGAGGATATAGGTGGTACTACAGAATTTCTAAGAGTGAAGCAGTTCACTTCTAAAATTACCGAAGCTATAAAAAAAGCCAAAACATTCAGATCTGAAAGTCCCTCTTTCACGGTTGTCATGAAGCCTGCCTATGTTGATGGATATAACTTGAATGTACCACTTGTCTTCATGAGAGACTACTTCAATAACATGATGCAGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTGTAAATTTAGTGAGTTATGCATCTGCAAATAGAAATGGTGCTCGATGGAAGTTTTCTAATGGTTGGTTGCAATTTGCTCGAGAAAGTAAATTTGTAGATGGAGATGATTGTGTGTTTGAACTCATCAACAGAGAAAATGCAGTACTTAATGTTCATATTTTTTGA 993 0.3646 MTYNCNRQNKHPIHTPILFFKIILRTSLQDGKLKLPNNFTKKYGGDMPNPMFLKPEDGTEWELFWTKNDGDIWLQKGWKEFSTYYSLDHGHMVLFEYKHTSHFDVRIFDKSTLEINYPFHCTQDERDNLDQISDDHSVKISDELPPCHKNTQKSPMSSPQPCKKLRTCTSNVERSSTLQIEGTILEKSKFASVKKEPDEDIGGTTEFLRVKQFTSKITEAIKKAKTFRSESPSFTVVMKPAYVDGYNLNVPLVFMRDYFNNMMQIVMLQFGKKLWPVNLVSYASANRNGARWKFSNGWLQFARESKFVDGDDCVFELINRENAVLNVHIF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi193g00002 330 Gene3D - 214 330 IPR015300 -
Gabi193g00002 330 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Gabi193g00002 330 PANTHER B3 DOMAIN-CONTAINING 15 328 - -
Gabi193g00002 330 SMART B3_2 234 330 IPR003340 GO:0003677
Gabi193g00002 330 SMART B3_2 19 111 IPR003340 GO:0003677
Gabi193g00002 330 CDD B3_DNA 18 109 IPR003340 GO:0003677
Gabi193g00002 330 Gene3D - 15 112 IPR015300 -
Gabi193g00002 330 Pfam B3 DNA binding domain 234 330 IPR003340 GO:0003677
Gabi193g00002 330 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Gabi193g00002 330 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Gabi193g00002 330 CDD B3_DNA 232 330 IPR003340 GO:0003677
Gabi193g00002 330 ProSiteProfiles B3 DNA-binding domain profile. 233 330 IPR003340 GO:0003677
Gabi193g00002 330 SUPERFAMILY DNA-binding pseudobarrel domain 228 330 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi193g00002 Gabi-Chr193 20092 22854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi193g00002 18 330 B3 DNA Binding Superfamily AT3G18990 27.893 3.18e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi193g00002 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi193g00002 - - lja:Lj0g3v0181669.1 314.309