Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi193g00001 ATGTTTCTCAAGCCTGAAGATGGCACTGAATGGGAATTATTTTGGACTAAAAATGATGGTGATATTTGGCTTCAAAAGGGTTGGAAGGAATTTTCTACATATTACTCCCTAGATCATGGTCATATGGTGTTGTTTGAATACAAGCACACTTCTCATCTTGATGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTTTCCATTGCACTCAAGATGAACAGGACAACCTTGACCAGATTAGTGACGATGACTCAGTTAAAATTTCGGATGAGCTACCAGCATGCCATAAGAATACACAGAAATCACCAATGTCTTCTCCTCAACCATGTAAGAAATTGAGAACTTGCACAAGTAAGGTTGAAAGAAGCTCTACTTTGCAAAACTTGCCTCAGCGTGTCCAAATTGAAGGTACAATCTTGGAGAAGTCTAAATTTGCATCCGTAAAGAAAGAACCGGATGAGAATATAGGTGGTACTACAGAATTTCTAAGAGTGAAGCAGTTCACTTCTAAAATTACCGCTATAAAAAAAGCCAAAACTTTCAGATCTAAAAGTCCCTCTTTCACGGTTGTCATGAAGCCTGCCTATGTTGATGGATATGACTTGGCTGTCCCAGTACAATTTGCTGAAATATATTTGAAGAAAAAGGAAAGGAATATCCTCCTTCAAGTCTTGGATGGGAGAACTTGGACTTGTAAATATAGATTCCCCAGAATTAGTAGTAGATGGAAGAAATTTGTAACTGATAATGATTTGAAAGTGGGAGATGTTTGTCTTTTTGAGATGACCAACATCCGAGACCTTTCTTTGAAAGTACACATCTTTCCACTTGCAGAAGAATCAAATTCCCCTTCAGTTCAAGGAGCTCTGAAAGAAGCTAGTGAATTCGCCTCAGAAAATCCCTCTTTCAAAGTTAAAATAAAGACCGATGATAAATTTAGACCGGATGTACCACTTGTCTTCATGAGAGACTACTTCAATAACATGATGCAGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTGTAAAGTTAGTGAGATATAAATCTGCACATAGAAATGGTGCTCGATGGAAGTTGGTTAATGGTTGGTTGCAATTTGCTCGAGAAAGTAAATTGGTAGATGGAGATTACTGGGTGTTTGAACTCATCAACAGAGAGAATGCAGTACTTAATGTTCATATATTTTGA 1200 0.3742 MFLKPEDGTEWELFWTKNDGDIWLQKGWKEFSTYYSLDHGHMVLFEYKHTSHLDVHIFDKSTLEIDYPFHCTQDEQDNLDQISDDDSVKISDELPACHKNTQKSPMSSPQPCKKLRTCTSKVERSSTLQNLPQRVQIEGTILEKSKFASVKKEPDENIGGTTEFLRVKQFTSKITAIKKAKTFRSKSPSFTVVMKPAYVDGYDLAVPVQFAEIYLKKKERNILLQVLDGRTWTCKYRFPRISSRWKKFVTDNDLKVGDVCLFEMTNIRDLSLKVHIFPLAEESNSPSVQGALKEASEFASENPSFKVKIKTDDKFRPDVPLVFMRDYFNNMMQIVMLQFGKKLWPVKLVRYKSAHRNGARWKLVNGWLQFARESKLVDGDYWVFELINRENAVLNVHIF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi193g00001 399 SUPERFAMILY DNA-binding pseudobarrel domain 299 399 IPR015300 -
Gabi193g00001 399 SUPERFAMILY DNA-binding pseudobarrel domain 2 68 IPR015300 -
Gabi193g00001 399 CDD B3_DNA 303 399 IPR003340 GO:0003677
Gabi193g00001 399 SMART B3_2 305 399 IPR003340 GO:0003677
Gabi193g00001 399 SMART B3_2 190 280 IPR003340 GO:0003677
Gabi193g00001 399 ProSiteProfiles B3 DNA-binding domain profile. 189 280 IPR003340 GO:0003677
Gabi193g00001 399 Gene3D - 170 281 IPR015300 -
Gabi193g00001 399 Gene3D - 287 399 IPR015300 -
Gabi193g00001 399 Gene3D - 1 62 IPR015300 -
Gabi193g00001 399 ProSiteProfiles B3 DNA-binding domain profile. 333 399 IPR003340 GO:0003677
Gabi193g00001 399 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 292 399 IPR044837 -
Gabi193g00001 399 SUPERFAMILY DNA-binding pseudobarrel domain 184 278 IPR015300 -
Gabi193g00001 399 Pfam B3 DNA binding domain 318 399 IPR003340 GO:0003677
Gabi193g00001 399 Pfam B3 DNA binding domain 190 277 IPR003340 GO:0003677
Gabi193g00001 399 Pfam B3 DNA binding domain 2 60 IPR003340 GO:0003677
Gabi193g00001 399 ProSiteProfiles B3 DNA-binding domain profile. 1 61 IPR003340 GO:0003677
Gabi193g00001 399 CDD B3_DNA 1 59 IPR003340 GO:0003677
Gabi193g00001 399 CDD B3_DNA 188 278 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi193g00001 Gabi-Chr193 15972 18060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi193g00001 291 399 B3 DNA Binding Superfamily AT3G18990 31.250 1.03e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi193g00001 B3 6.4e-08 CL0405