Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1932g00002 ATGCAGATCTTCGTGAAAACTTTGACCGGTAAGACCATCACCCTTGTGGTGGAGAGTTCTGATACCATTGATAATGTGAAATCTAAGATCCAAGACAAGGAAGGGATCCCACCTGACCAGCAAAGGATCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACTCTTGCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGCTTCGTCTCAGGGGTGGCATGCAAATCTTTGTTAAGACCTTGACTGGGAAAACCATCACTCTCGAGGTTGAATCCTCAGATACCATTGATAATGTCAAGACCAAGATCCAGGACAAAGAGGGTATCCCTCCAGATCAGCAGAGGCTGATTTTTGCTGGCAAGCAACTTGATGATGGCAGAACCCTCGCTGATTACAATATCCAGAAGGAGTCTACACTTCACTTGGTGCTTCGTTTGAGAGGTGGTGTAACATCCCCGTCTCGAGTTGGTTCAATTAACATACATATGATAAAACAGAAAACAGCGAAAGACTTAACTTACGAAAATACGAGTTAA 546 0.4396 MQIFVKTLTGKTITLVVESSDTIDNVKSKIQDKEGIPPDQQRIIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRGGVTSPSRVGSINIHMIKQKTAKDLTYENTS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1932g00002 181 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi1932g00002 181 SMART ubq_7 77 148 IPR000626 GO:0005515
Gabi1932g00002 181 SMART ubq_7 1 72 IPR000626 GO:0005515
Gabi1932g00002 181 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gabi1932g00002 181 FunFam Polyubiquitin 3 1 76 - -
Gabi1932g00002 181 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gabi1932g00002 181 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Gabi1932g00002 181 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Gabi1932g00002 181 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Gabi1932g00002 181 Gene3D - 77 176 - -
Gabi1932g00002 181 Gene3D - 1 76 - -
Gabi1932g00002 181 FunFam Ubiquitin-60S ribosomal L40 fusion 77 154 - -
Gabi1932g00002 181 CDD Ubl_ubiquitin 1 76 - -
Gabi1932g00002 181 PANTHER UBIQUITIN 77 166 - -
Gabi1932g00002 181 PRINTS Ubiquitin signature 129 150 IPR019956 -
Gabi1932g00002 181 PRINTS Ubiquitin signature 108 128 IPR019956 -
Gabi1932g00002 181 PRINTS Ubiquitin signature 87 107 IPR019956 -
Gabi1932g00002 181 CDD Ubl_ubiquitin 77 152 - -
Gabi1932g00002 181 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Gabi1932g00002 181 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1932g00002 Gabi-Chr1932 3942 7704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1932g00002 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 2.23e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1932g00002 K08770 - pvy:116123349 293.123