Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1931g00026 ATGACCGGCGACGGCCGCAGACGGGACTGGAAGGGCACTAGGATCTCGAAGAAGCAGAAGCTGATCCGCAACGCCGAGGAAGAGCTCGAGGCAAAATTAGGGTTCGATAATTTCTCAGAGGGCGAAAAGCGACTTGGATGGTTGCTCACTTTTGCATCCTCATCTAGCGAGGATGAAGACACTCACAAAGAGTACAGCTGTGTTGATCTTTACTTTGTTACACAGGATGGGTCTACATTCAAGTCAAAATACAGATTTCGTCCTTATTTCTATGCAGCTATAAAGGATAAAATGGAGATGGATGTTGAAACATACCTGAGACGACGTTATGAAAGTCAGATTGCAGATATTGAAATTTTAGAGAAAGAAGACCTGGATCTTAAAAACCATTTGTCTGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGAGGCCTACGAGTCCATACTAACAGGAAGAAGAGAACAAAAGCCTCAAGATTTTCTAGATTGCATAATTGGTCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGTCAGTGGTATGATGTTGGAGTGTCCAATACTGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACCAAACTTCCATTAAAATTTCCTGATGCTGACTATGATTTAATTATGATGATTTCATACATGGTCGATGGGCAAGGCTATTTAATCATAAACAGAGAGTGTGTTGGGGATGATATAGAGGATTTGGAGTACACTCCAAAACCGGAATTTGAAGGGTGCTTTAAGGTGACAAATGTTCAAAATGAGATTGACCTTCTTAGGTTATGGTTTTCTCATATGCAAGAGGTTAAACCTGGTATCTACGTGACGTATAATGGTGATTTCTTTGATTGGCCATTCATTGAACGAAGGGCAGCCCATCACGGGTTCAAAATGAGCGATGAATTGGGGTTTCAATGTGACATGAATCAAGGAGAATGTCGTGCTAAATTTGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTGAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCATTAGAGGTTAACCCTGAGGACATGGTTCGCTTTGCAAAGGAGAAACCTCAGATGATGGCCTCCTATTCAGTTTCTGATGCAGTATCAACTTATTACTTGTATGCAACTTATGTTCATCCCTTTATTTTCTCTCTAGCAACTATTATACCCATGTCACCAGATGAGGTCTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTCATGGTCCAGGCATACAAGGCTAATGTTATCTGCCCTAACAAACACCAATCTGATCCCGAGAAGTTTTATAACAATCATCTTCTCGAGAGTGAGACATACATAGGTGGCCATGTGGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATCTAGTTTTACACTCGAGCCTTCTGCCTATGAGAAATTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAAGAGTAGAGGGGAAGATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGAATGCTATCATGGAAAAGCTTGGAAAATTACGAGATGCACCAGTACGTGAAGAATGCCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGCCTTCAGCCACCATCAATTGTTACAGATGAGGTTTGCACTGCATGTGATTTTAACCGTCCCGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGCGGAGAAACATTCATGGCAAAAAGAAGTGACTATTATCATCTAAAGAAGCAGATTGAATCCGAGTTTGTTGATAGTGCTCCTGAGAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATCAAGACTAAAAGAGCGATTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTAACAAACCAGTTACTGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGATAGAAGATATGAATATAAAGGCCTTAATAAAGTTTGGAAGGGAAAATTATCAGAGGCCAAAGCCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGATATGGTAGTGCTATATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAAGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATACACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACGGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGATTCAAAGAGGAAGTTCACAATTTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATTAGGAAAACTTATACAACTCAGAGTGAATGCTCTATTGAATTTGAGGTGGACGGGCCATACAAGGCAATGATCCTTCCTGCTTCTAAGGAAGAGGGAATTTTAATTAAGAAGAGATATGCTGTTTTCAATGATGATGGAACCCTTGCTGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTCGACAAGTTTCTCCATGGCTCAACTTTAGAGGAATGTTATTTAGCTGTCGCTTCTGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAATTGCTTGATTATATATCAGAATCAAGTACAATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTCGCCAACTTTCTTGGTGATACAATGGTTAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTTTCATCAGATGTTGGCATTCGATCCATAATTGACTGGTCCTATTACAAGGGGCGGCTTAGTTCTGCAATTCAAAAAATCATTACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTAGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGTTGATGCATTTAACTCAATGAAGAGGGATGAGCACTCAAAAAGGCATATTAATTCTAATGGTGTCTCCCTTGCGGTGCATGAAGAGACTGTTAATGACTTGGAGGACTTTGGAAACATGGGTAGTAGTTCTACATGTGGACCTAGACCAATTGTGCGGCATCTTGAAGCTAATATTAAACGGCATTCAGTGAAGCTCAATGGTCAAGAAGATTCGGAGCAACAACATAATGACAATAACAGCAAGGATCAGCCACTTTCACTATTACAAGAAAGTGAAATATCAGGTGAAAATGTTGATAGAACTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAATATATTCTGGAAAGGAGAAAGAAGCGAAGATTGGAGAATTCAAAGAATTCTGACCATGTGAATGGCATACTTGAACAAACGAATGGTAAGATGAAGGGCAGGAGTAATGTCAGTTCATATTTCAGAAATCATGAGGTAGTCCTAACACGTTGCCACTGGCAGATAATACAGCTAGTTCAAAGTTCACAGATTGGCCAATTTTTTGCTTGGGTGGTTGTTGACGGGATTATGCTTAAGATTCCTCTTTCTGTTCCTAGAGTCTTTTATCTCAATTCTAGATCACCAATTACTGAAGAATTTTTGGGCAAACGTGTCAACAAGACTCTTCCCCATGGAAGACATAGTTATAACCTGTATGAGGTCACAATTAATGAAGTTCAATATAGGGAAGCAAGTAAAAAACTTGCAGCTCTTTTGGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGATGCCACTGGAGTTTAACGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAGACTTCTAAAAAACGTAGTCTACAAGACCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGCGCTTATCTCGAACAATCCATATCCTTCTTTTACTTGTACCATAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGCAGTTAATCCATATCAAAACAAAGATTTATCACCAACTTTTCTTGAAAGACAATTTCACGATGCTTGCCAAGCTTTTTCTATTGAGCCACCTCCGAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAACAGTGATACAAAGAGCAATAAATGATCACAGGAGCGAACATCATGGGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAACTAGTAAAATTGGGCATCCGAGCTCTAGATGATTTTCCATGCCTGAGTATTCCTTCAAATGCCCGTGATAGTCAATATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCAGCATCTGTCCAGTGGCTAAATGAAAGAATTGCTTTATCAAGATATGCCCATGTACCACTGGGGAACTTTGAACTTGACTGGCTTATATTTACAGCGGATACCTTTTTTTCAAGAGCGTTGCATGATAATCAACAGGTACTTTGGATTTCTGATGACGGTCTTCCAGATGTAGATGGCATTAATGTTGAAGATAACTGTTTTGCTGACGAGGTCCACCAACCTGTTCTTACGTATCCTGGAGCTTATAGAAAAGTTACGGTGGAGCTAAAGATACACCACCTCGCTGTAGATGCTCTTCTTAAATGCAATCAGGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTTGATAGTGGCTTTGATGAGTCTACCTCATGTACACATGCCTTTCGAGTCCTAAAACAGTTGATCCAGCGATGCCTTGCGGATGCAGTCACATCTGGAAATGTTTATGCTGATGCAGTATTGCAACATCTATATCGATGGCTTTGCAGCCCTGAATCAAAACTTCATGATCCAGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGCTGTTGGCAGAGTTCCGCAAATTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATTGACACAGGGAAATATGATATGTCTGCAGCCAAAGCTTACTGTGACAGTTTGTTAAAAATTATACAATCTAGTGACCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCATTGCTGTTCATGGATCAGTATAACTACGGTGGAATACCAGCAAAATCTGATGAAGCCATGAATGATGAATCACAAGTTGATATTATATCGAGCTGGAATATTGCTGAATACTTACCCAAAAAAATCCAAGACCATTTTGTTTTCATTGTTTCTCAATTCATGTATATTCCCTGGAACTATGCACATAAACAAGCAGCAATTAGGGCGTCATTGCTGAATGACGAGTCTTGCACCCCATCAATTAACATCGTAGCTGCTGAGGCTTTTGAATCAGAAATAACGGAATATATTAAAGGGCAGATTAGCTCTTACTTCACTGACAAACTGCTAGGAATTGTACGTGATATTGGTCTTCACATGAAGGGGATGAACAGATCAGAAAACGACCAGAATATATCATCTGCCCTTCCTCAACTTAAAAGTGATCACCGTAGAGGGGATGCAGCCTTGGAATTTATCGAGCATGTCTGTGCTGTCATGGCCCGTGACCAAAATGTGCAGCATGATATTTTGGTCATGAGAAAGATTTTGTTAAAGTATGTTCATGTCAGGGAGTTTGCTCCAGAAGCTGAGTTTCGTAATCGTTGTCATTCCATCATCTTACCCAATGTTATCTGCAGCTATTGTAATGGCTGCAGGGACTTGGACTTGTGCTGTGACTCAGCTTTATTGACTCAGGAGTGGCGTTGTGCTGTGCCACAGTGCGGCCAGCCTTATGACCGCGAGGCGACGGAGAATACTCTTCTTCAGATTGTACGACAAAGAGAACGGCAATATCACCTCCAAGATCTGGTGTGTCTCAGGTGCAGCCAGGTGAAAGCTGCACATTTGGCTGAGCAGTGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGTAAGTGAATTTTGCACTAAGATGCAGGTTTTCTTGAACATTGCTTCTCGTCAGAAATTCAAACTTCTCCAAGAATGTACCTCCTGGATTTTAGAATTTAGATAG 6597 0.4076 MTGDGRRRDWKGTRISKKQKLIRNAEEELEAKLGFDNFSEGEKRLGWLLTFASSSSEDEDTHKEYSCVDLYFVTQDGSTFKSKYRFRPYFYAAIKDKMEMDVETYLRRRYESQIADIEILEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMNVKSDLMHVVERNQAKSDAAEAYESILTGRREQKPQDFLDCIIGLREYDVPYHVRFAIDNDIRCGQWYDVGVSNTGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEIDLLRLWFSHMQEVKPGIYVTYNGDFFDWPFIERRAAHHGFKMSDELGFQCDMNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYATYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYEKLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLGKLRDAPVREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKRSDYYHLKKQIESEFVDSAPERSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLNKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTQSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYLAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLANFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKGRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIVDAFNSMKRDEHSKRHINSNGVSLAVHEETVNDLEDFGNMGSSSTCGPRPIVRHLEANIKRHSVKLNGQEDSEQQHNDNNSKDQPLSLLQESEISGENVDRTVDYQGWLQIKKRKWKYILERRKKRRLENSKNSDHVNGILEQTNGKMKGRSNVSSYFRNHEVVLTRCHWQIIQLVQSSQIGQFFAWVVVDGIMLKIPLSVPRVFYLNSRSPITEEFLGKRVNKTLPHGRHSYNLYEVTINEVQYREASKKLAALLADPDVEGIYETKMPLEFNAIVQLGCVCKVDKTSKKRSLQDPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKAITVVAVNPYQNKDLSPTFLERQFHDACQAFSIEPPPRNGINFKVDYVAHVKDAETVIQRAINDHRSEHHGPMVAVIECPNVQLVKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASVQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALHDNQQVLWISDDGLPDVDGINVEDNCFADEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGFDSGFDESTSCTHAFRVLKQLIQRCLADAVTSGNVYADAVLQHLYRWLCSPESKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDMSAAKAYCDSLLKIIQSSDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAHKQAAIRASLLNDESCTPSINIVAAEAFESEITEYIKGQISSYFTDKLLGIVRDIGLHMKGMNRSENDQNISSALPQLKSDHRRGDAALEFIEHVCAVMARDQNVQHDILVMRKILLKYVHVREFAPEAEFRNRCHSIILPNVICSYCNGCRDLDLCCDSALLTQEWRCAVPQCGQPYDREATENTLLQIVRQRERQYHLQDLVCLRCSQVKAAHLAEQCACAGSFRCKEDVSEFCTKMQVFLNIASRQKFKLLQECTSWILEFR 2198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1931g00026 2198 SMART DUF1744_2 1513 1884 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gabi1931g00026 2198 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Gabi1931g00026 2198 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2196 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Gabi1931g00026 2198 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Gabi1931g00026 2198 SUPERFAMILY DNA/RNA polymerases 486 1115 IPR043502 -
Gabi1931g00026 2198 SUPERFAMILY Ribonuclease H-like 59 467 IPR012337 -
Gabi1931g00026 2198 Pfam Domain of unknown function (DUF1744) 1531 1884 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gabi1931g00026 2198 Gene3D - 941 1125 IPR042087 -
Gabi1931g00026 2198 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Gabi1931g00026 2198 Gene3D Palm domain of DNA polymerase 752 937 IPR023211 -
Gabi1931g00026 2198 Gene3D - 238 468 IPR036397 GO:0003676
Gabi1931g00026 2198 CDD DNA_polB_epsilon_exo 240 443 - -
Gabi1931g00026 2198 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Gabi1931g00026 2198 CDD POLBc_epsilon 503 1122 - -
Gabi1931g00026 2198 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi1931g00026 2198 Pfam DNA polymerase family B 753 1064 IPR006134 GO:0000166|GO:0003677
Gabi1931g00026 2198 Gene3D DNA Polymerase, chain B, domain 1 55 230 - -
Gabi1931g00026 2198 FunFam DNA polymerase epsilon catalytic subunit 723 798 - -
Gabi1931g00026 2198 FunFam DNA polymerase epsilon catalytic subunit 752 937 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1931g00026 24 2195 Core DNA Replication Machinery Family AT2G27120 68.727 0.0 3055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1931g00026 K02324 - gmx:100812003 3875.09