Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1931g00013 ATGCTTGATTCCGTCCTTTTCGCGCTTTTCTTGCCTTGTCTTGGCATGAGCTCCATCTTCATCATCTACATGTGCCTTCTCTGGTACGTCACTACCCATCAGCCTCCCGTCACACCACCGGCGAAGTCCGTCTCTGAAAAGGGGTTGTCCCCTTCGGAGCTCGAGAAGCTTCCTAGAATCACCGGAAAAGAATTGGTCATGGGCACTGAATGCGCCGTGTGCCTCGACGACATCGAGAACGAGCAACCGGTTCGACTGGTCCCCGGTTGCAACCACGGGTTCCATGTGGAATGTGCTGACACTTGGTTTTCCAAGCACCCGCTTTGTCCAGTTTGTCGAGCCAAGCTCGACCCTCAAAATTTCACTTCTGAAAGTCCATGCTGA 384 0.5312 MLDSVLFALFLPCLGMSSIFIIYMCLLWYVTTHQPPVTPPAKSVSEKGLSPSELEKLPRITGKELVMGTECAVCLDDIENEQPVRLVPGCNHGFHVECADTWFSKHPLCPVCRAKLDPQNFTSESPC 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1931g00013 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Gabi1931g00013 127 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Gabi1931g00013 127 SUPERFAMILY RING/U-box 70 119 - -
Gabi1931g00013 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Gabi1931g00013 127 SMART ring_2 71 112 IPR001841 -
Gabi1931g00013 127 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1931g00013 Gabi-Chr1931 75698 77204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1931g00013 1 127 C3H Transcription Factor Family AT5G42200 53.676 4.45e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1931g00013 K19037 - gmx:100811160 219.935