Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1930g00007 ATGGAAGAAGATGAGGATGAAGTTGATGAAAAAGCTAAGAAGATGGAAGAAGATGAGGATGAAGTTTATGAAGAACTTGAGAAAGGTCTTAACCAAGAGGACCGATCAACCCAAAAGCAGTCTCGGGTTGTTTGGACCGAAGAGCTACATCGGTGTTTTGTGGCCGCTGTTAATGACTTGGGTGTTGACAAGGCTGTACCTAGAAAAATTCTTCAATTGATGTACGCAGAGAAGCATCTTACTAGGGCGCATGTGGCCAGCCATCTGCAGAAATATAGACTCCGTCTGAAAAGAATCAGCTCTAAGGCAACCCAGCAAGTTAATAATGTCAGTCTTTTTAGATCCTCTTCTCCTGGTGGGATGATTAATAGATTGGACACTCTTGCTGCTCTGAATGTGCCAGAGTTGCCTTCTTCTGCAACTCTTCAATTGGGTCATGCACAGAACTTAAGCAACTCAACCAATGGTCAACTTCAATTCCAAGCAGCCATAGTTTATGGTAATCAAGAAGGTTCACAGGGATTACCAATGTCTGGGGGGCTTGACCAACTACTGTAG 558 0.4355 MEEDEDEVDEKAKKMEEDEDEVYEELEKGLNQEDRSTQKQSRVVWTEELHRCFVAAVNDLGVDKAVPRKILQLMYAEKHLTRAHVASHLQKYRLRLKRISSKATQQVNNVSLFRSSSPGGMINRLDTLAALNVPELPSSATLQLGHAQNLSNSTNGQLQFQAAIVYGNQEGSQGLPMSGGLDQLL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1930g00007 185 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 95 IPR006447 GO:0003677
Gabi1930g00007 185 Coils Coil 1 32 - -
Gabi1930g00007 185 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 159 IPR044841 GO:0003700|GO:0006355
Gabi1930g00007 185 MobiDBLite consensus disorder prediction 1 27 - -
Gabi1930g00007 185 Gene3D - 36 100 - -
Gabi1930g00007 185 FunFam Two-component response regulator 36 100 - -
Gabi1930g00007 185 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Gabi1930g00007 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Gabi1930g00007 185 MobiDBLite consensus disorder prediction 1 40 - -
Gabi1930g00007 185 SUPERFAMILY Homeodomain-like 37 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1930g00007 Gabi-Chr1930 98220 101372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1930g00007 38 184 Response Regulator Gene Family AT2G25180 40.110 4.71e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi1930g00007 Myb_DNA-binding 5.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1930g00007 - K14491 gmx:100803879 167.162