Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00039 ATGGCAACTGACCACGAAGAAGATATCAAGGATGAGAAGAATCCCCGCCCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTATGGTTTGGGACCTTATTCCACAAGTATAAAAAAAGTAGAGAAGGAAATAAAAGATATGGCAAAGAAAGTCAACGATTTATGTGGTATCAAGGAGTCAGACACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACGAAGATTATAAATCCAAACTCCGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCGAAGTTTGTTGTTGGGCTGGGTGACAAAGTTTCGCCCACTGACATAGAGGAAGGGATGCGCGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACTGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAACTTCCCATGCTCCACCCAGAGAAATTTGTTAAGCTAGGAATTGATCCTCCAAAGGGTGTTCTTTGTTATGGTCCACCAGGGACTGGTAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACGGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGTTGGTTCAGAAATATGTTGGTGAAGGTGCTCGGATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGGCCTGACACTCTAGATCCAGCACTACTACGGCCTGGACGATTGGACCGAAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAAATTTTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCGAATTCCACTGGAGCTGATATAAGGAGTGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCTCGAAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTTAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTACAACTGA 1281 0.434 MATDHEEDIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00039 426 FunFam 26S protease regulatory subunit 7 33 157 - -
Gabi1929g00039 426 CDD RecA-like_PAN_like 166 336 - -
Gabi1929g00039 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 416 IPR027417 -
Gabi1929g00039 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 412 - -
Gabi1929g00039 426 Gene3D - 32 157 IPR012340 -
Gabi1929g00039 426 FunFam 26S protease regulatory subunit 7 158 337 - -
Gabi1929g00039 426 Pfam AAA+ lid domain 360 403 IPR041569 -
Gabi1929g00039 426 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Gabi1929g00039 426 SMART AAA_5 201 340 IPR003593 GO:0016887
Gabi1929g00039 426 Gene3D - 158 337 IPR027417 -
Gabi1929g00039 426 FunFam 26S protease regulatory subunit 7 339 410 - -
Gabi1929g00039 426 Gene3D - 339 420 - -
Gabi1929g00039 426 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00039 Gabi-Chr1929 275498 280218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00039 170 391 Calmodulin-binding Proteins AT3G56690 37.220 1.34e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00039 K03061 - gmx:100808239 851.662