Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00037 ATGGTTGAGTATCGAAGGCTGCTACTGCTGCTGTTCATCAGCACCTGCATTCTTCGTTTGATGCCCGATGGTGTCACTGCCACAGATCCAAATGATGCTGCTGCTGTAAGGGCTATGTTTCAAAGTATGAACTCACCATCTCAGCTAGGTTGGCCTGCTAATGGTGATGATCCGTGTGGACAATCTTGGAAAGGCATTACTTGCTCAGGCAACCGTGTTACAGAGATTGAGTTATCTAATCTTGGACTAACTGGAACATTGGCTTACGGATTACAAGCCTTGACATCTGTGACCAAACTAGACATGAGTGACAACAATCTTGTAGGAGCCATACCATACCAACTTCCTCCTAATGTGCAGCTTTTAAATCTTGCTAGTAATAACTTCACTGGAACAGTCCCCTACTCTATTTCTAATTTGACCTCTCTTACAGACCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGGTGTCGACTTTCAAAATCTTTCTACACTCTCTATATTGGATCTCTCTTTCAATTTTCTGACTGGTGACCTCCCTCAGACTTTGAGCTCACTTTCAGGAATAACCACTATGTATCTACAAAACAACCAGTTTACAGGCACTATCGATGTCCTTGCTAATCTGCCTCTGGATAATCTGAATGTGGAAAACAATAATTTTACAGGCTGGATACCAGAACAATTGAAAAAGATAAACCTACAGACCGGTGGTAATGCATGGAGCTCAGGACCTGCACCCCCACTTCCTCCTGGGACACCTCCAGCACCTAAAAGCAAGCAACACCACAAATCTGGTGGTGGAAGTGCTACCCCCTCAGATGCTGGCAGTGGCACAGTTGGTGATGGCAAAAAATCTGGTATAGGAGGTGGTGGCATAGCTGGAATTTTGATCTCCGTCATTGTTGTTGGGGCAGTAGTAGCATTCTTTCTGGTGAAGAGAAAATCCAAGAAGTCATCTTCAGATCCAGAAAAGCTGGAAAATCAGTCCTTTCCCCCTCTTCCTTCAAATGAAGTGCATGAAGTGAAGTCTGTGCAAACTTCCTCTGTAATTGACTTGAAGACGTTTGATACTTCTGCCACAATAAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGACAATGAATTCTCAAAGAAGCCCACTCTTGTCAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATAGCTGATCTGCAGATTGCCACTGGCAGCTTCAGTGTGGATCACCTTGTTGGTGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGAAAGGTTCTGGCAGTGAAGAAGATAGATTCATCTGTCATTCCCAATGATTTGTCGGAAGATTTTACAGAAATAGTTTCAAACATCTCCCATTTACATCATCCAAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGTATGGACAACATCTCTTGGTATATGAGTTTCATAAAAGTGGATCACTACATGACTTCCTTCACCTATCAGATGAATATAGTAAACCATTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCACGTTCTTTAGAGTACCTACATGAAGTTTGTTCGCCGTCAGTTGTTCATAAGAATATTAAGTCAGCCAACATATTACTTGATGCAGAGCTTAACCCTCATCTTTCAGACAGTGGATTGGCAAGCAATATTCCAAATGCAGACCAGATATTGAACCATAATGTTGGATCTGGATATGATGCACCTGAAGTTGCCTTGTCTGGTCAGTATACTCTGAAAAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAGCTTCTCAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGATCCGAGCAATCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCACTGAAAGGGTTATATCCTGTTAAATCTCTTTCTCGTTTTGCCGATGTTATTGCTCTCTGCGTTCAGCCGGAGCCTGAGTTCCGACCACCAATGTCAGAGGTGGTTCAAGCACTTGTACGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTGGAAGTGGAAATGATCTTGGAGGAGGATCCCAACGAGGGAGTGATGACCCGTCTATACGAGACATCTAA 2169 0.4329 MVEYRRLLLLLFISTCILRLMPDGVTATDPNDAAAVRAMFQSMNSPSQLGWPANGDDPCGQSWKGITCSGNRVTEIELSNLGLTGTLAYGLQALTSVTKLDMSDNNLVGAIPYQLPPNVQLLNLASNNFTGTVPYSISNLTSLTDLNLGHNQLQQGLGVDFQNLSTLSILDLSFNFLTGDLPQTLSSLSGITTMYLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPEQLKKINLQTGGNAWSSGPAPPLPPGTPPAPKSKQHHKSGGGSATPSDAGSGTVGDGKKSGIGGGGIAGILISVIVVGAVVAFFLVKRKSKKSSSDPEKLENQSFPPLPSNEVHEVKSVQTSSVIDLKTFDTSATINLKPPPIDRHKSFDDNEFSKKPTLVKKTVTAPANVKSYSIADLQIATGSFSVDHLVGEGSFGRVYRAQFDDGKVLAVKKIDSSVIPNDLSEDFTEIVSNISHLHHPNVTELVGYCSEYGQHLLVYEFHKSGSLHDFLHLSDEYSKPLIWNSRVKIALGTARSLEYLHEVCSPSVVHKNIKSANILLDAELNPHLSDSGLASNIPNADQILNHNVGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFGSGNDLGGGSQRGSDDPSIRDI 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00037 722 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Gabi1929g00037 722 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 254 - -
Gabi1929g00037 722 MobiDBLite consensus disorder prediction 238 285 - -
Gabi1929g00037 722 PANTHER LEUCINE RICH REPEAT KINASE 2 71 693 - -
Gabi1929g00037 722 Gene3D Ribonuclease Inhibitor 29 249 IPR032675 -
Gabi1929g00037 722 SUPERFAMILY L domain-like 28 231 - -
Gabi1929g00037 722 SUPERFAMILY Protein kinase-like (PK-like) 396 686 IPR011009 -
Gabi1929g00037 722 Gene3D Phosphorylase Kinase; domain 1 376 491 - -
Gabi1929g00037 722 MobiDBLite consensus disorder prediction 320 341 - -
Gabi1929g00037 722 ProSitePatterns Protein kinases ATP-binding region signature. 420 443 IPR017441 GO:0005524
Gabi1929g00037 722 ProSiteProfiles Protein kinase domain profile. 414 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1929g00037 722 Gene3D Transferase(Phosphotransferase) domain 1 493 704 - -
Gabi1929g00037 722 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 492 700 - -
Gabi1929g00037 722 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 491 - -
Gabi1929g00037 722 MobiDBLite consensus disorder prediction 698 722 - -
Gabi1929g00037 722 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Gabi1929g00037 722 MobiDBLite consensus disorder prediction 327 341 - -
Gabi1929g00037 722 Pfam Protein tyrosine and serine/threonine kinase 417 686 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00037 Gabi-Chr1929 267434 274745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00037 27 716 Strubbelig Receptor Gene Family AT1G53730 66.428 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi1929g00037 PK_Tyr_Ser-Thr 7.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00037 - - gmx:100807707 1193.33