Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00034 ATGACAATGATGAGCGGCAGCAACAACAACAACAACAACGTTGGACAGTTTGGGAACACAACGCTGACCAAAGTGTTCGTGGGAGGGCTAGCCTGGGAGACTCACACAGACACTTTGAGAGAGCATTTTGAAAAGTTCGGTGAGATCCTCGAAGCCGTCATCATTTCCGATAAGCTCACCGGCAGATCCAAAGGCTATGGCTTTGTAACCTTCAAGGAAGCTGAGGCTGCCAAGAAGGCTTGCGAGGACTCAAGTCTCATTATCAACGGGCGCCGAGCCAACTGCAATCTGGCTTCGCTCGGTGCACGCCGTCCAAGATCCTCTTCGGCCACTTCACCACCCACTCCAACTCCTCCACAGCCACAACCACAAGGAGGATCAAATGGTGGAGGAATGAGGAACGCCAATCACCTCCAGTGGTACTATCCGGTTGGAACACCTACACCAGCTGCTTCCCCATTTCATCATCAGGCCCTTGCTTTCTACGGGTACCCACCGACGTACATTGGAACAGACATGAATTACAATTACAATCAGTGTTTGCAGAAGGTGTGCTACGGAAACGGTGGGGGCTACATGAATGGACAGTTGTCGCATGTGTACCCAAGCCAGGCTATTGTGGGTGCGAATACATTGATGCCAATGTACCCTGTCTACCACTTCCCCAGAACCGAGACAATGGGTGTCCCTGCCCACATCTTCCAGCCAACCATACCAACCCATTTTGCCTCTGTGGCGCCCCCATCCCTCACTGCTAACACAGAGACAGTTTGTCTGGCTGTGGAATAG 789 0.5209 MTMMSGSNNNNNNVGQFGNTTLTKVFVGGLAWETHTDTLREHFEKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEDSSLIINGRRANCNLASLGARRPRSSSATSPPTPTPPQPQPQGGSNGGGMRNANHLQWYYPVGTPTPAASPFHHQALAFYGYPPTYIGTDMNYNYNQCLQKVCYGNGGGYMNGQLSHVYPSQAIVGANTLMPMYPVYHFPRTETMGVPAHIFQPTIPTHFASVAPPSLTANTETVCLAVE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00034 262 FunFam Putative RNA-binding protein ARP1 17 106 - -
Gabi1929g00034 262 PANTHER BOULE-RELATED 12 230 - -
Gabi1929g00034 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 82 IPR000504 GO:0003723
Gabi1929g00034 262 Gene3D - 6 142 IPR012677 -
Gabi1929g00034 262 SUPERFAMILY RNA-binding domain, RBD 23 110 IPR035979 GO:0003676
Gabi1929g00034 262 SMART rrm1_1 24 96 IPR000504 GO:0003723
Gabi1929g00034 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Gabi1929g00034 262 MobiDBLite consensus disorder prediction 102 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00034 Gabi-Chr1929 233421 235496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00034 25 99 C2H2 Transcription Factor Family AT2G19380 44.000 5.82e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00034 - - lang:109337745 300.827