Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00033 ATGACTCGGGAAACTCCATTCCCATCATCATCATCATCAACATCAACATCAACACGACCCTCTTCCGTGTACATGGTTTCTAAGTTGACGATAATACTGTTAGTTGTGTCATGGGTGGTTGTTATTGTTCAAGGCTCCTCTTGTAACCAAGTGGATAAAGAGTCGCTCTTGGCCTTCGCCAGGAACATATCATCATCGGCGTCTTCCCCTCTCAATTGGTCTGCTTCTGTTGATTGCTGTCTTTGGGAAGGAATTCTTTGTGATGAGGACAAACACAGAGTCATCCATCTATCCCTACCATCAAGAGGTCTCACTGGCTTCATCTCCTCATCTCTCACAAACCTCACTGCTCTCTCACACCTTAATCTCTCCCATAACAGGTTATCTGGTAATCTTCCAAACCATTTTTTCTCACTTTTTAATCACCTGCAGATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGTTGCTAATCACAGTAGCAGTAGCAGTACTAATACTAGTATTATCCGGGTGCTGGATTTGTCTAGTAATTTATTCAATGGAACGCTCCCAAGTTCTCTCCTTCAGAACCTGGCCACAGGAGGGAGTTTGACATCTTTTAATGTTAGCAACAATAGCTTCACGGGTCATATTCCCACTTCTCTCCTCTGCGTTAACATCAATAACTCCTCCTCCCTCAGATTCTTGGATTATTCCTACAACCGTTTCGATGGCATGATTGAGACTGGACTCGGAGCATGTTCCAAGCTCGAGAAATTTCGAGCAGGTTTCAATTCCCTATCCGGTCCTCTTCCCGGTGATATTTTTAATGCTGTTGCTCTCACAGAAATCTCCTTGCCCCTCAATAAACTCTCTGGAACCATTGATGATGGCATTGTTAGCCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATCAGTTCACAGGTCCCATTCCTCCGGATATTGGCAAGCTCTCCAAATTGGAAAGGCTCCTCCTTCATGCCAACAATCTAACTGGTAGTCTTCCCCCATCTCTGACAAACTGTGTCAATCTTGTCATGTTGAATTTGAGGGTCAACTCCTTGGGGGGAAATCTCTCAGCTTTCAATTTCTCCGGACTACTCAGGCTCACTACACTTGACCTTGCCAACAATACCTTTAGCGGTATTCTACCTCCAACCCTTTATGCATGCAAGTCACTTAAAGCGGTAAGGCTAGCTTCTAATAAGCTTGAGGGACAGATCTTGCCTGACATACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAACGTGAGTAATGTCACCGGGGCTCTGAGGATACTCATGGGGCTCAAGAACCTCAGCACCCTTATGCTCTCCCAGAATTTTCACGGTGAAATGATGCCAGATGATGCAAACATAACACAACCCGATGGATTCCAAAAGATCCAAGTTCTAGCATTGGGTGCTTGTAAGCTCACAGGCCAAATACCTGGCTGGCTTGTTAATCTGAAGAAGCTTGAGGTCTTGGATCTGTCCTATAATCAAATTAGCGGTTCAATTCCTCCTTGGTTGGGCACACTTCCTCAGCTTTTCTACATAGACTTATCTTTTAACCTCCTTACGGGAATATTTCCTTCGGAGCTCACAAGGCTTCCAGCACTAACATCAGGAGAGGCATATCATAATGTAGAAAGGACTTACCTGGAGTTACCCCTCTTTGCTAATGCCAACAATGTTTCCCAGCTGCAATATAATCAGCTCTCCAACCTACCACCAGCAATATATCTGGGACACAATAGCCTCAATGACAGTATCCCCACAGAGATTGGCCTACTGAAAGTTCTTCATCAGCTGGACCTTAGCTATAACGAATTCTCTGGCAACATCCCTGTTCAAATTTCCAACTTGACTAACTTGGAGAAACTATATCTCTCAGGGAACCAACTGTCTGGCCAAATTCCTGCTTCACTCAAAAGTTTGCATTTTTTGTCTGTTTTCAGTGTAGCATACAATGATCTTCAAGGACAGATACCAAGTGGTGGTCAATTTGATACTTTCCCCTCCTCCAGCTTTGAAGGAAACCCACAGTTGTGTGGTTCAGCTATTCAGCACTCTTGTCTTCCTCAACAAAGTAGTACTGCTGGAGGTCACAGCTTAAAGAAAAAGCTAATAATTGGATTTGTCATTGCAGCATCTTTTGGCACTGTTTCCCTCATTTCAGTGTTGATAGTGTGGATACTATCCAAGAGGAGGATCAATCCAGGAGACTCTGACAAGATTGAACTAGAATCAATTTCTGCCTATTCTAGCAGTGGAGTTCATCCTGAGGTTGACAAGGAGGCTAGTGTAGTGGTATTGTTCCCTAATAAAACAAATGAAATAAAGGATCTTACCATATTTGAAATATTAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTACCAGATGGAACTACCGTGGCAATCAAGAAACTTTCAGGAGATTTGGGTCTAATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTGTCGACAGCACAGCATGAGAATCTAGTTGCATTGCAAGGCTATTGTGTACATGAGGGCTTTCGGCTTCTTATATATACTTACATGGAAAATGGAAGTCTGGATTACTGGTTGCATGAAAATGTTGATGGTCCATCTCAACTTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCAGATATGTGAACCACACATAGTACATCGTGATATAAAGTCAAGCAATATACTCCTTGATGATAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGGCCCGATTGATTCTTCCTTATCAGACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCAGAGTACGGACAAGCATGGGTGGCGACTCTGAGAGGAGATATCTACAGCTTTGGGGTTGTCATGCTTGAGTTGCTCACTGGGATGAGGCCTATCGATGTAAGCAAGCCAAAAATGTCAATGGAGTTGGTTTCCTGGGTTCAACAAATGAGGAGTGAAGGAAAACAAGATCAAGTTTTTGATCCTCTTCTGAGAGTGAAGGGCTTTGAAGAAGAGATGCTCCAGGTACTTGATGTGGCCTGCATGTGTGTCCATCAGAATCCTTTCAAGAGACCAAGCATTAGAGAAGTTGTTCAATGGCTGAAGAATGTAGGATCATCCAACCAACAAATGAATAGAGACTAG 3261 0.4315 MTRETPFPSSSSSTSTSTRPSSVYMVSKLTIILLVVSWVVVIVQGSSCNQVDKESLLAFARNISSSASSPLNWSASVDCCLWEGILCDEDKHRVIHLSLPSRGLTGFISSSLTNLTALSHLNLSHNRLSGNLPNHFFSLFNHLQILDLSYNRLSGVANHSSSSSTNTSIIRVLDLSSNLFNGTLPSSLLQNLATGGSLTSFNVSNNSFTGHIPTSLLCVNINNSSSLRFLDYSYNRFDGMIETGLGACSKLEKFRAGFNSLSGPLPGDIFNAVALTEISLPLNKLSGTIDDGIVSLTNLTVLELYSNQFTGPIPPDIGKLSKLERLLLHANNLTGSLPPSLTNCVNLVMLNLRVNSLGGNLSAFNFSGLLRLTTLDLANNTFSGILPPTLYACKSLKAVRLASNKLEGQILPDILGLQSLAFLSISTNNVSNVTGALRILMGLKNLSTLMLSQNFHGEMMPDDANITQPDGFQKIQVLALGACKLTGQIPGWLVNLKKLEVLDLSYNQISGSIPPWLGTLPQLFYIDLSFNLLTGIFPSELTRLPALTSGEAYHNVERTYLELPLFANANNVSQLQYNQLSNLPPAIYLGHNSLNDSIPTEIGLLKVLHQLDLSYNEFSGNIPVQISNLTNLEKLYLSGNQLSGQIPASLKSLHFLSVFSVAYNDLQGQIPSGGQFDTFPSSSFEGNPQLCGSAIQHSCLPQQSSTAGGHSLKKKLIIGFVIAASFGTVSLISVLIVWILSKRRINPGDSDKIELESISAYSSSGVHPEVDKEASVVVLFPNKTNEIKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPDGTTVAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHEGFRLLIYTYMENGSLDYWLHENVDGPSQLDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDDKFEAHVADFGLARLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDIYSFGVVMLELLTGMRPIDVSKPKMSMELVSWVQQMRSEGKQDQVFDPLLRVKGFEEEMLQVLDVACMCVHQNPFKRPSIREVVQWLKNVGSSNQQMNRD 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00033 1086 Pfam Leucine rich repeat 474 533 IPR001611 GO:0005515
Gabi1929g00033 1086 ProSiteProfiles Leucine-rich repeat profile. 498 521 IPR001611 GO:0005515
Gabi1929g00033 1086 Pfam Protein kinase domain 803 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1929g00033 1086 SMART LRR_sd22_2 140 158 - -
Gabi1929g00033 1086 SMART LRR_sd22_2 296 325 - -
Gabi1929g00033 1086 SMART LRR_sd22_2 496 511 - -
Gabi1929g00033 1086 SMART LRR_sd22_2 115 134 - -
Gabi1929g00033 1086 SMART LRR_sd22_2 629 655 - -
Gabi1929g00033 1086 SUPERFAMILY L domain-like 229 688 - -
Gabi1929g00033 1086 Gene3D Ribonuclease Inhibitor 337 436 IPR032675 -
Gabi1929g00033 1086 Gene3D Ribonuclease Inhibitor 49 336 IPR032675 -
Gabi1929g00033 1086 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 266 361 - -
Gabi1929g00033 1086 Pfam Leucine Rich Repeat 631 653 IPR001611 GO:0005515
Gabi1929g00033 1086 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515
Gabi1929g00033 1086 FunFam Tyrosine-sulfated glycopeptide receptor 1 366 704 - -
Gabi1929g00033 1086 Gene3D Phosphorylase Kinase; domain 1 764 877 - -
Gabi1929g00033 1086 FunFam Receptor-like protein 2 50 172 - -
Gabi1929g00033 1086 Gene3D Ribonuclease Inhibitor 437 707 IPR032675 -
Gabi1929g00033 1086 FunFam Leucine-rich repeat receptor-like protein kinase 878 1084 - -
Gabi1929g00033 1086 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 259 360 - -
Gabi1929g00033 1086 SUPERFAMILY L domain-like 47 280 - -
Gabi1929g00033 1086 PRINTS Leucine-rich repeat signature 496 509 - -
Gabi1929g00033 1086 PRINTS Leucine-rich repeat signature 143 156 - -
Gabi1929g00033 1086 ProSiteProfiles Protein kinase domain profile. 802 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1929g00033 1086 Pfam Leucine rich repeat N-terminal domain 52 88 IPR013210 -
Gabi1929g00033 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Gabi1929g00033 1086 FunFam Leucine-rich repeat receptor protein kinase MSP1 768 877 - -
Gabi1929g00033 1086 SMART LRR_typ_2 320 344 IPR003591 -
Gabi1929g00033 1086 SMART LRR_typ_2 369 393 IPR003591 -
Gabi1929g00033 1086 SMART LRR_typ_2 296 319 IPR003591 -
Gabi1929g00033 1086 SMART LRR_typ_2 496 520 IPR003591 -
Gabi1929g00033 1086 SMART LRR_typ_2 115 139 IPR003591 -
Gabi1929g00033 1086 SMART LRR_typ_2 629 653 IPR003591 -
Gabi1929g00033 1086 SMART LRR_typ_2 140 163 IPR003591 -
Gabi1929g00033 1086 ProSitePatterns Protein kinases ATP-binding region signature. 808 831 IPR017441 GO:0005524
Gabi1929g00033 1086 Gene3D Transferase(Phosphotransferase) domain 1 878 1086 - -
Gabi1929g00033 1086 SMART serkin_6 802 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1929g00033 1086 SUPERFAMILY Protein kinase-like (PK-like) 786 1073 IPR011009 -
Gabi1929g00033 1086 ProSiteProfiles Leucine-rich repeat profile. 142 163 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00033 Gabi-Chr1929 214823 218628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00033 1 743 Miscellaneous Gene Families AT1G17250 49.802 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi1929g00033 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00033 - - ccaj:109797788 1744.17