Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00028 ATGGCTTCCGCTTGTGCTTCCACTGCCATTGCAGCAGTTGCCATCTCTACACCAAGTTCCCAGAAGAATGGATCACCCTTGGGAACCCCAAAAGCTTCTTTTCTTAGTGGGAGGAAATTGAGGGTGAATAAGTACACAGCACCAGTTAGAGGACGATCCAGTACTACAGAGTGTGCAGCAGCTGACGTTGACAGGCCTCTATGGTTTCCAGGAAGCACCCCTCCTCCATGGCTTGATGGCAGTCTCCCAGGAGACTTTGGGTTTGATCCTCTAGGTCTTGGATCTGATCCTGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTTGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATTCCAGAATTCCTAACAAAGATTGGTATCTTAAACACACCTTCATGGTACACAGCTGGAGAACAGGAATACTTCACGGACACCACTACCCTCTTCATAGTTGAGCTCATTTTCATTGGCTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAACCAGGGTGTGTTAACACTGACCCTATCTTCCCCAACAACAAGCTCACAGGGACTGATGTTGGTTACCCAGGTGGTCTTTGGTTTGACCCACTTGGATGGGGAAGTGGTTCTCCTGAGAAGCTCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGATTGGCAATGTTGGCTGTAATGGGTGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTTACCCCCAAGTGA 813 0.4908 MASACASTAIAAVAISTPSSQKNGSPLGTPKASFLSGRKLRVNKYTAPVRGRSSTTECAAADVDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00028 270 SUPERFAMILY Chlorophyll a-b binding protein 61 268 - -
Gabi1929g00028 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
Gabi1929g00028 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 22 268 IPR001344 GO:0009765|GO:0016020
Gabi1929g00028 270 FunFam Chlorophyll a-b binding protein, chloroplastic 75 260 - -
Gabi1929g00028 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00028 Gabi-Chr1929 182597 184179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00028 46 270 Chloroplast and Mitochondria Gene Families AT3G61470 88.938 7.53e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00028 K08908 - gmx:100784089 522.316