Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00026 ATGGACAGCCCAGCATCGATGGGGGAAACAGTGCCTCTGGGATATAGATTCAAGCCGACAGATGAAGAGCTTGTGGGTCACTACCTGAAGTACAAGCTGCTGGGTTATGATTCCAGGGTTCAGAATGTCATTGCTGAGGTTGATGTTTGCAAGTTTGAGCCTTGGGACTTACCAGCGCTTTCCAAGGTAAAATCGGAAGACCCAGAGTGGTTTTTCTTCAGTCCTCGCGATTTGAAGTACGCAAACAGTGACAGGTCTAACAGGTTAACCAACGCTGGCTACTGGAAGGCCACTGGTAAGGACAGGAAAATCAAGACACGAGACACCAACAATGTCATTGGCACCAAGAAGACCCTGGTTTTCCACAGGGGTCGTGTTCCTCATGGTGTCAAAACCAACTGGGTAATTCACGAATATCGTGCAGTTACATTTCCTGTTGACAAGAGAACTTTTGTCTTGTGTCGCTTGATGAAAAAAGCTGAGAAGAAAGTGGAAGGCAGAACTGATGAATTGATCAATGAAGCGGAGCCTATTGTTGCTGATCATGAAAACCAGGCAACAGATGATGGAATTCCAGATGTATTTACTTTGCCAGAAGTGACTCTGGAATCAATCTTTCTAGCACCACCTCAGGCAGACGAATATGACTTCCCCTCACTACAGTACTCTCCAATTGTCACTGATCACGAACCATTCCATACCAACATCTGCTTTGAGAATGAGAACAGTATCAGGCAGTTTCCATTTGATACTACCGAAGACGAAGACAATATTTTGTTCTTGAATTCAGTTTTAGTTGATGAGGACGTTTTCATCAACGAAGAAAGAAGGGATGCTTTTGTTAATGAATCCATCCACTCAGAGTCATTGAGAGGGGTATATTATAAAAGCAGTGAAACAGACGCTGAACTAGTCTCTGTACGGGGCACCACATCTGCGTGTAATAAACATGCTGTTTCAAGCGGATGCCAGGTATTGAAAATAGTTAAAACATCACCAGATGCTGGTCATCTTCCGTTGTCTTCTAAAACTGAAGTAAACAGAGAGAAAAAGGACAGTACCTTTGGTGATAATTTCTGGGGAGGGGACTCTTCTGGTGATTCAACTTCAAATGAACCCTTGTCTATGTTGGTTACCGAGAATATTATCTCTCCTTCAGCTCCAACAGCTAGCTTTTCTTCAACTTCAAGAAGATGCAAAACTAAATATCAAGCGAGATCAAACAACTCTGAGTCACAGAAAGCTGCTCCAGGAAGATCTCAAACACACAGAAAGGTTTCAAGCAAAGCAGTATACCACCGGCATGAGGTGCAGAAGGAAACAGACAAACTGGAGTCAAACAAAGATCAGAATAAAGCTCAAGATGCCAGGTCAAGAATGAATTTGGAAACCACAAGCGATCAATCACCTGTAGCCAATAGAAAGGGTTCTTTCATCTACCTGCAGACACCTTCAATAAGTCAAAACCCAAATCCGCGCTCAGTGTATCTTATCAATGTAATCATAGGGTTTTCATTGCTGATATTCACTATTTGGGATATGCTATCAATTGGGAACTTGTGCTAG 1566 0.4285 MDSPASMGETVPLGYRFKPTDEELVGHYLKYKLLGYDSRVQNVIAEVDVCKFEPWDLPALSKVKSEDPEWFFFSPRDLKYANSDRSNRLTNAGYWKATGKDRKIKTRDTNNVIGTKKTLVFHRGRVPHGVKTNWVIHEYRAVTFPVDKRTFVLCRLMKKAEKKVEGRTDELINEAEPIVADHENQATDDGIPDVFTLPEVTLESIFLAPPQADEYDFPSLQYSPIVTDHEPFHTNICFENENSIRQFPFDTTEDEDNILFLNSVLVDEDVFINEERRDAFVNESIHSESLRGVYYKSSETDAELVSVRGTTSACNKHAVSSGCQVLKIVKTSPDAGHLPLSSKTEVNREKKDSTFGDNFWGGDSSGDSTSNEPLSMLVTENIISPSAPTASFSSTSRRCKTKYQARSNNSESQKAAPGRSQTHRKVSSKAVYHRHEVQKETDKLESNKDQNKAQDARSRMNLETTSDQSPVANRKGSFIYLQTPSISQNPNPRSVYLINVIIGFSLLIFTIWDMLSIGNLC 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00026 521 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 407 - -
Gabi1929g00026 521 MobiDBLite consensus disorder prediction 334 372 - -
Gabi1929g00026 521 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Gabi1929g00026 521 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Gabi1929g00026 521 MobiDBLite consensus disorder prediction 431 456 - -
Gabi1929g00026 521 MobiDBLite consensus disorder prediction 386 425 - -
Gabi1929g00026 521 Coils Coil 434 454 - -
Gabi1929g00026 521 MobiDBLite consensus disorder prediction 386 470 - -
Gabi1929g00026 521 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Gabi1929g00026 521 MobiDBLite consensus disorder prediction 358 372 - -
Gabi1929g00026 521 SUPERFAMILY NAC domain 8 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00026 Gabi-Chr1929 171501 174467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00026 9 170 NAC Transcription Factor Family AT4G35580 58.333 2.54e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1929g00026 NAM 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00026 - - pcin:129287580 469.159