Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00025 ATGGAGTTGATGCAAGAAGAAGTTAAAGCGTATTCTGATAGCAGGGAAGAAGAGGAGGAAGAGGAAATCACAAGAGAAGAAAGCAGCAGGTTACACCAGCAAGATGCAGCTTCAAATTTCATCAATCACAGAAAGCAGCAGCTAGAGTTCATGGACTTGACAGTACTGGGGAGCAACAAGGAGGAGGAGGAAGCAGGGAATTTGCAACAAGGAGGAGTTCATCATCCACATGCCACATCTTCTTCAACCACCAGCTGCTGCAACGAGCTGCCAGTGGAGAAAGAGCACATGTTTGATAAAGTGGTGACACCAAGCGATGTAGGGAAGCTGAACCGACTGGTGATACCAAAGCAACACGCGGAGAAGTACTTCCCCCTTGACTCATCATCCAACGACAAAGGCTTGCTTCTCAATTTTGAGGACAGAAATGGCAAGATGTGGCGGTTCAGGTATTCCTATTGGAATAGCAGCCAGAGCTATGTGATGACCAAGGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTCGATGCTGGTGACGTTGTCTCCTTCCAGCGTGGCCTTGGTGAATTGAATAGACATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCATCCTCCTGATCCTTCAACATCACTCATCACACCTTTGTTTCTTCCCATCAGATGGGGTGGCAGATTATACTCTCAGCCAGCTTCCCCATCTCCCACGTCGTCTACTGTGCCACCTCGCTACCATGATATTAATCATTTTCAGCAACAACTCAATTACAACAATATGTATACTTCTTTTCATCATCATCAGCATCAGCATCATCATCAGCCACAGCAACAGCCATATCACCAGCAGTACCACCATAACAACAACTATAATGAGCTCAATTCGGGATCTGGGTCAGTCTATTACCTGCGGTCAACACCATCAATGCCAATGGGTGAGAGGGAACAACAAGAGACAGGGAACACTGTCCCTATGATCATTGATTCTGTGCCGGTTGGTCATCATCATCACCATGGTGCCTTGAGTGGCGCTGCTACTACTACTACTACTACTAGTACTAGTGGTAATAGTACTAGTACTACTGGAAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCGTCGTCAGTGGAAGAATCCAAATGCTTGTCCTCGGCTTCGGCAACACATGTGACAATGGTTAATTCACTTCCCTCTTCTTCTCTTCCACCTCTTCAGCGATCGAGGGTACCCCATGAAGACCTACTTTCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGGAACTTCAGTGCTGTTTGATTTGGATCCCTCTTTGCAATACCGGCAGTGA 1338 0.4679 MELMQEEVKAYSDSREEEEEEEITREESSRLHQQDAASNFINHRKQQLEFMDLTVLGSNKEEEEAGNLQQGGVHHPHATSSSTTSCCNELPVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGLGELNRHRLYIDWRRRPDHPPDPSTSLITPLFLPIRWGGRLYSQPASPSPTSSTVPPRYHDINHFQQQLNYNNMYTSFHHHQHQHHHQPQQQPYHQQYHHNNNYNELNSGSGSVYYLRSTPSMPMGEREQQETGNTVPMIIDSVPVGHHHHHGALSGAATTTTTTSTSGNSTSTTGKRLRLFGVNMECASSSVEESKCLSSASATHVTMVNSLPSSSLPPLQRSRVPHEDLLSSSARFGDQRGGTSVLFDLDPSLQYRQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00025 445 SUPERFAMILY DNA-binding pseudobarrel domain 95 204 IPR015300 -
Gabi1929g00025 445 MobiDBLite consensus disorder prediction 334 362 - -
Gabi1929g00025 445 Coils Coil 1 21 - -
Gabi1929g00025 445 ProSiteProfiles B3 DNA-binding domain profile. 98 203 IPR003340 GO:0003677
Gabi1929g00025 445 Gene3D - 92 207 IPR015300 -
Gabi1929g00025 445 MobiDBLite consensus disorder prediction 342 362 - -
Gabi1929g00025 445 MobiDBLite consensus disorder prediction 62 85 - -
Gabi1929g00025 445 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 380 IPR044800 GO:0003700
Gabi1929g00025 445 MobiDBLite consensus disorder prediction 1 33 - -
Gabi1929g00025 445 Pfam B3 DNA binding domain 98 202 IPR003340 GO:0003677
Gabi1929g00025 445 CDD B3_DNA 96 185 IPR003340 GO:0003677
Gabi1929g00025 445 FunFam B3 domain-containing protein 91 212 - -
Gabi1929g00025 445 SMART B3_2 98 203 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00025 Gabi-Chr1929 156952 159278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00025 92 379 RAV Transcription Factor Family AT2G46870 47.423 1.24e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi1929g00025 B3 1.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00025 K09287 - gmx:100781489 420.624