Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00024 ATGGAGTTGATGCAAGAAGAAGTTAAAGCGTATTCTGATAGCAGGGAAGAAGAGGAGGAAGAGGAAATCACAAGAGAAGAAAGCAGCAATGCCACTACGAATACTGAATCTCACAATTCATCAACTGGGTTAGGGTTACACCAGCAAGATGCAGCTTCAAATTTCATCAATCACAGAAAGCAGCAGCTAGAGTTCATGGACTTGACAGTACTGGGGAGCAACAAGGAGGAGGAGGAAGCAGGGAATTTGCAACAAGGAGGAGTTCATCATCCACATGCCACATCTTCTTCAACCACCAGCTGCTGCAACGAGCTGCCAGTGGAGAAAGAGCACATGTTTGATAAAGTGGTGACACCAAGCGATGTAGGGAAGCTGAACCGACTGGTGATACCAAAGCAACACGCGGAGAAGTACTTCCCCCTTGACTCATCATCCAACGACAAAGGCTTGCTTCTCAATTTTGAGGACAGAAATGGCAAGATGTGGCGGTTCAGGTATTCCTATTGGAATAGCAGCCAGAGCTATGTGATGACCAAGGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTCGATGCTGGTGACGTTGTCTCCTTCCAGCGTGGCCTTGGTGAATTGAATAGACATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCATCCTCCTGATCCTTCAACATCACTCATCACACCTTTGTTTCTTCCCATCAGATGGGGTGGCAGATTATACTCTCAGCCAGCTTCCCCATCTCCCACGTCGTCTACTGTGCCACCTCGCTACCATGATATTAATCATTTTCAGCAACAACTCAATTACAACAATATGTATACTTCTTTTCATCATCATCAGCATCAGCATCATCATCAGCCACAGCAACAGCCATATCACCAGCAGTACCACCATAACAACAACTATAATGAGCTCAATTCGGGATCTGGGTCAGTCTATTACCTGCGGTCAACACCATCAATGCCAATGGGTGAGAGGGAACAACAAGAGACAGGGAACACTGTCCCTATGATCATTGATTCTGTGCCGGTTGGTCATCATCATCACCATGGTGCCTTGAGTGGCGCTGCTACTACTACTACTACTACTAGTACTAGTGGTAATAGTACTAGTACTACTGGAAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCGTCGTCAGTGGAAGAATCCAAATGCTTGTCCTCGGCTTCGGCAACACATGTGACAATGGTTAATTCACTTCCCTCTTCTTCTCTTCCACCTCTTCAGCGATCGAGGGTACCCCATGAAGACCTACTTTCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGGAACTTCAGTGCTGTTTGATTTGGATCCCTCTTTGCAATACCGGCAGTGA 1383 0.4657 MELMQEEVKAYSDSREEEEEEEITREESSNATTNTESHNSSTGLGLHQQDAASNFINHRKQQLEFMDLTVLGSNKEEEEAGNLQQGGVHHPHATSSSTTSCCNELPVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGLGELNRHRLYIDWRRRPDHPPDPSTSLITPLFLPIRWGGRLYSQPASPSPTSSTVPPRYHDINHFQQQLNYNNMYTSFHHHQHQHHHQPQQQPYHQQYHHNNNYNELNSGSGSVYYLRSTPSMPMGEREQQETGNTVPMIIDSVPVGHHHHHGALSGAATTTTTTSTSGNSTSTTGKRLRLFGVNMECASSSVEESKCLSSASATHVTMVNSLPSSSLPPLQRSRVPHEDLLSSSARFGDQRGGTSVLFDLDPSLQYRQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00024 460 Gene3D - 107 222 IPR015300 -
Gabi1929g00024 460 MobiDBLite consensus disorder prediction 357 377 - -
Gabi1929g00024 460 Coils Coil 1 21 - -
Gabi1929g00024 460 FunFam B3 domain-containing protein 106 227 - -
Gabi1929g00024 460 MobiDBLite consensus disorder prediction 77 100 - -
Gabi1929g00024 460 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 21 397 IPR044800 GO:0003700
Gabi1929g00024 460 ProSiteProfiles B3 DNA-binding domain profile. 113 218 IPR003340 GO:0003677
Gabi1929g00024 460 Pfam B3 DNA binding domain 113 217 IPR003340 GO:0003677
Gabi1929g00024 460 SMART B3_2 113 218 IPR003340 GO:0003677
Gabi1929g00024 460 MobiDBLite consensus disorder prediction 28 45 - -
Gabi1929g00024 460 MobiDBLite consensus disorder prediction 1 45 - -
Gabi1929g00024 460 MobiDBLite consensus disorder prediction 349 377 - -
Gabi1929g00024 460 CDD B3_DNA 111 200 IPR003340 GO:0003677
Gabi1929g00024 460 SUPERFAMILY DNA-binding pseudobarrel domain 110 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00024 Gabi-Chr1929 156860 159279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00024 107 394 RAV Transcription Factor Family AT2G46870 47.423 1.20e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi1929g00024 B3 1.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00024 K09287 - gmx:100781489 412.535