Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00023 ATGGAGGATGGGAATAGGGTTGTTGCGGGGGAAGACCAAGTGGGTCACCGTTCTAGCCCCTCTTACTGGCTGGACGCGTGTGAGGACATATCCTGCGATTTCATTGATTTTGATGTGTCATCCATCGTCTCAGAGCAGCCTGATAGCACTTCCAATCAGGACTTCTTCGGTGGGATTGATCGAATCTTGGACAGCATCAAGAACGGTGGTGGCCTCCCTCTTGATGTTGAACCCAATTCTAACTCTAATGTCACTGCAGCAGCAGAAGCAGGAGGAGGAGGAGGAGGAGGAGTGTCGTTGACCCCAATTGCTAATGCTGGGTCCAATGGCACTCTGGAGATACATGATCGTAATGGTGAAAGTAACGGGTTTCATAAGCCTTCAAATGGGATTGAAGGGGAGGAAAATGGAGTTCAGAGTCCCAATAGAGGCCGTGATCTACATGATGTTGATGGGGAAGAGAGATGCAAGAAGAGGGCTAGGTTTGGAAACTATAAGAATGAGAGCCAGAGGCAGCATTATTATTATGGAAGAGTGAATTATCAAGGCAAGGATAGAGAGAGGAGTTTTAGTAATAGGAAGAGGCCACGGGACAGGGATGAGATTGATAGGAGGGATAAAGATTGTGTCAGGAAAAGAGAACATTGTGGCAGGAGAGATGTTAGAGAACAGAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGATATTGTCTTTCGCTTGGGCCCTTGGGAAGCTGATCGTAATAGAGAAGAAAAAATGGTCAATGATACCAAACAGGAAAGCAATGGAAAGCTTGATAAGCAATCTGAGGATGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGCAGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATCAAAAGTATACATGAGAGTTTACAAAAGCAAGATAAGAAAATGCTTGCTGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAGGTAATTCGTGAGCGGACTGGTTATCAAGTGGGCCACTATTGCGGAGAAATGGGGCAGGATTTCTGGGATGCCCGAAGGTGGCAGCGTGAATTTGACGCCAAGCATGTGTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCCTGATTCTGGACGAGTGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCTGAGTTCTACCACACAACACCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGTCAAGTAGATTGTGCAATTAAAATTCGTAATCTTGAAAGCAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCTATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCGGGCAGTTTATGTTATCTACATGAACAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGATCTAAGGAAGAGCTGCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCCCTTGGTGAACTGGGGCAGTGGTGTGCTTATAAGGTTGCACAATCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTCGATGTCAAGTTTCAGGAATCTTATCTGAGCAAAGTCGTCTCTCTTCTTAAATGCCAACTGTCAGAGGGTGCAGTTTGTGAAAAAAATGCTGGAGTTGATGACTCAGAGTGTGATACAGCTCACAGTGGATCTAAACATGAAGAGGTTGAGGAAGGAGAGCTTCCAGACAGTCACGTGATCTCTGGCGGGGAGCATGTGGACGTCATAATAGGAGCTGCTGTGGCTGATGGCAAAGTGACCCCCAAGGTGCAGGCACTGATCAAAATACTTCTCAAGTATCAGCACACGGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTCGTCTCTGCATTAGTTCTACCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTAATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTGATTCGCTTTGACCTTGCAAAGACCGTTCTGGCATACATTCAGTCTAGAGGCCGTGCTAGAAAGCCTGGATCTGATTACATCCTGATGGTTGAGAGGGGGAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGCAGAGAAGCAATAGAGAGAACAGACCTTAGTCACCTGAAAGACACTTCAAGGTTGATCTCTATAGATACCCGACCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTCAGTTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCGAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCACGAGAAACCAGGAGGTCCCACTGAATATTCTTGCAAGCTTCAACTACCATGTAATGCACCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGACAAAGGAAGTGGAGGAGAAAAAGAAAAGGCCGAGCAAAATGATGAAGGAGATCCACTTCCGGGGACTGCTAGACATAGGGAATTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAACTCCAAAGTGCTTCATCTCTATATGTATGCTGTGAAGTGTGAAAATGTAGGCCACTCAAAGGATCTGTTCTTGACTCAAGTTTCAGATTTTGTAGTGCTTTTTGGCAATGAGCTGGATGCAGAGGTAGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTATAGGGTCGATAGATATTACTGAGAGTCAGTTGGCATCCTTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCGACAACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAATTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAAAATCCCCTCCAGAGAGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCTCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTGACAGAGATGCCATGCAAACACAAAAGCAAATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCAGCAGAGAACTCCTTCCCAAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCCTATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATATACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATATTGCAAGAATCTTCTATCCCCTCGATTTGAACACAGTGAAGCATATGAAAATGAATCTGAAGAGAATCATGACAAGACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTTGTACACCCACTGCCCGGATCGCTTGTTCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAATTCAGCTTAAGAATATGATAAAGTATCCTGTCCAGTCTTTAAAGATCTTGGAAGCCTTGACTGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGAGCAGAGCTTCTAGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTTCTGAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATTTCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCTAGATGGGCCGCTCCTGGGGTGCTGCCTGTCTTTGACGAGGATACCAAGGATGGGGAGTCATCGTTATTTGACCAGGAGCAATCCATTTCTAAGACTGAGAGGATGGAGTGTCATACTGATGGATATCAGGATGAAATGGAAGACGGAGAACTTGAGAGTGATTCAAGTTCGTACAGAGTTCTGTCCAGCAAGACTCTTGCTGATGTTGTGGAAGCACTGATTGGGATATATTATGTCCAAGGTGGTAAGATTGCTGCTAACCACCTTATGAAATGGGTTGGTATTCAAATAGAATTTGATCCTGATGAGATGGAGTGTACAAGAAGGCCATTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGTTTTAGAAGGTGCTTTGAATATCAAGTTTAAAGACAGGGGGCTACTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTGTCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCTGTCTTGGACCATCTTATCACCAGGCATTTGTTTTTCACTTACACAGATCTTCCACCAGGACGCCTGACTGACCTTAGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAGCACAATCTTCACGTGCATCTTCGACATGGGTCCAGTGCTCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCGAAGCCAGGGTTTAACTCATTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGGATACTTCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTACAAGAGCGATGTCAGCAGCAGGCCGAAGGCTTAGAGTATAGAGCGAGTCGTATGGGGAATTTGGCCACTGTAGAAGTATTTATTGATGGGGTGCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAGTTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGCAAAAACTCTGGAGCAGAACGATGAAAACGGGAAAAAGAATGCAAACCACACATTTACAAGACAAACATTAAATGATATATGTTTGCGAAGAAATTGGCCTATGCCATTCTACCGGTGCGTGAGTGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTGCGCGTCAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTGGAACTACTAAATAAATTGTACTCTTGA 5832 0.4386 MEDGNRVVAGEDQVGHRSSPSYWLDACEDISCDFIDFDVSSIVSEQPDSTSNQDFFGGIDRILDSIKNGGGLPLDVEPNSNSNVTAAAEAGGGGGGGVSLTPIANAGSNGTLEIHDRNGESNGFHKPSNGIEGEENGVQSPNRGRDLHDVDGEERCKKRARFGNYKNESQRQHYYYGRVNYQGKDRERSFSNRKRPRDRDEIDRRDKDCVRKREHCGRRDVREQRGYWERDKSGSNDIVFRLGPWEADRNREEKMVNDTKQESNGKLDKQSEDAKERVPEEKARQYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSIHESLQKQDKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDAKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAGSLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGSKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVCEKNAGVDDSECDTAHSGSKHEEVEEGELPDSHVISGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISIDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKVLHLYMYAVKCENVGHSKDLFLTQVSDFVVLFGNELDAEVVLSMSMDLFIARTVTTKASLVFIGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDNSVDPMNQIDWHLVETIIGADAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPDRDAMQTQKQINMTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAYENESEENHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMIKYPVQSLKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLFQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQEQSISKTERMECHTDGYQDEMEDGELESDSSSYRVLSSKTLADVVEALIGIYYVQGGKIAANHLMKWVGIQIEFDPDEMECTRRPFNVPDSILRSVDFDVLEGALNIKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRMGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKTLEQNDENGKKNANHTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00023 1943 FunFam Endoribonuclease Dicer 1 1242 1360 - -
Gabi1929g00023 1943 ProSiteProfiles Ribonuclease III family domain profile. 1405 1565 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 850 IPR001650 -
Gabi1929g00023 1943 CDD RIBOc 1622 1777 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 967 990 - -
Gabi1929g00023 1943 Pfam PAZ domain 1240 1382 IPR003100 GO:0005515
Gabi1929g00023 1943 Pfam Dicer dimerisation domain 878 966 - -
Gabi1929g00023 1943 Gene3D - 277 521 IPR027417 -
Gabi1929g00023 1943 CDD RIBOc 1403 1587 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 SMART helicmild6 719 805 IPR001650 -
Gabi1929g00023 1943 SMART ultradead3 279 482 IPR014001 -
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 180 202 - -
Gabi1929g00023 1943 FunFam Endoribonuclease dicer-like 1 873 974 - -
Gabi1929g00023 1943 FunFam endoribonuclease Dicer homolog 1 1871 1940 - -
Gabi1929g00023 1943 Gene3D Ribonuclease III domain 1602 1775 IPR036389 GO:0004525|GO:0006396
Gabi1929g00023 1943 Gene3D Ribonuclease III domain 1385 1578 IPR036389 GO:0004525|GO:0006396
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 107 154 - -
Gabi1929g00023 1943 SUPERFAMILY RNase III domain-like 1605 1776 IPR036389 GO:0004525|GO:0006396
Gabi1929g00023 1943 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1865 1940 IPR014720 -
Gabi1929g00023 1943 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 467 IPR014001 -
Gabi1929g00023 1943 Pfam Helicase conserved C-terminal domain 686 803 IPR001650 -
Gabi1929g00023 1943 Gene3D paz domain 1238 1360 - -
Gabi1929g00023 1943 SMART riboneu5 1621 1777 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 SMART riboneu5 1401 1585 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 SUPERFAMILY RNase III domain-like 1378 1583 IPR036389 GO:0004525|GO:0006396
Gabi1929g00023 1943 FunFam Endoribonuclease dicer-like 1 677 839 - -
Gabi1929g00023 1943 CDD DEXHc_dicer 282 481 - -
Gabi1929g00023 1943 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 878 973 IPR005034 GO:0016891
Gabi1929g00023 1943 Gene3D - 1778 1855 - -
Gabi1929g00023 1943 Pfam Ribonuclease III domain 1419 1565 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 Pfam Ribonuclease III domain 1641 1754 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 ProSiteProfiles PAZ domain profile. 1222 1362 IPR003100 GO:0005515
Gabi1929g00023 1943 Gene3D Dicer dimerisation domain 873 975 IPR038248 -
Gabi1929g00023 1943 Pfam Type III restriction enzyme, res subunit 289 449 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 139 154 - -
Gabi1929g00023 1943 ProSitePatterns Ribonuclease III family signature. 1641 1649 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 PANTHER DICER-RELATED 1227 1845 - -
Gabi1929g00023 1943 SUPERFAMILY PAZ domain 1240 1362 IPR036085 GO:0005515
Gabi1929g00023 1943 CDD DSRM_DCL_plant 1871 1932 - -
Gabi1929g00023 1943 SMART PAZ_2_a_3 1222 1386 IPR003100 GO:0005515
Gabi1929g00023 1943 FunFam Endoribonuclease dicer-like protein 278 518 - -
Gabi1929g00023 1943 SMART DRBM_3 1866 1939 IPR014720 -
Gabi1929g00023 1943 SMART DRBM_3 1781 1842 IPR014720 -
Gabi1929g00023 1943 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1865 1938 - -
Gabi1929g00023 1943 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1780 1843 IPR014720 -
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 250 279 - -
Gabi1929g00023 1943 ProSiteProfiles Ribonuclease III family domain profile. 1606 1754 IPR000999 GO:0004525|GO:0006396
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 964 990 - -
Gabi1929g00023 1943 SUPERFAMILY dsRNA-binding domain-like 1869 1939 - -
Gabi1929g00023 1943 FunFam Endoribonuclease dicer-like 1 1601 1775 - -
Gabi1929g00023 1943 CDD PAZ_CAF_like 1215 1364 - -
Gabi1929g00023 1943 Gene3D - 676 842 IPR027417 -
Gabi1929g00023 1943 MobiDBLite consensus disorder prediction 636 656 - -
Gabi1929g00023 1943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 817 IPR027417 -
Gabi1929g00023 1943 SUPERFAMILY dsRNA-binding domain-like 1736 1862 - -
Gabi1929g00023 1943 CDD SF2_C_dicer 683 813 - -
Gabi1929g00023 1943 Gene3D - 1871 1941 - -
Gabi1929g00023 1943 FunFam Endoribonuclease dicer-like protein 1384 1577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00023 Gabi-Chr1929 120128 131703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00023 702 845 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 3.93e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00023 K11592 - gmx:100811631 3392.82