Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00022 ATGGAGGATGGGAATAGGGTTGTTGCGGGGGAAGACCAAGTGGGTCACCGTTCTAGCCCCTCTTACTGGCTGGACGCGTGTGAGGACATATCCTGCGATTTCATTGATTTTGATGTGTCATCCATCGTCTCAGAGCAGCCTGATAGCACTTCCAATCAGGACTTCTTCGGTGGGATTGATCGAATCTTGGACAGCATCAAGAACGGTGGTGGCCTCCCTCTTGATGTTGAACCCAATTCTAACTCTAATGTCACTGCAGCAGCAGAAGCAGGAGGAGGAGGAGGAGGAGGAGTGTCGTTGACCCCAATTGCTAATGCTGGGTCCAATGGCACTCTGGAGATACATGATCGTAATGGTGAAAGTAACGGGTTTCATAAGCCTTCAAATGGGATTGAAGGGGAGGAAAATGGAGTTCAGAGTCCCAATAGAGGCCGTGATCTACATGATGTTGATGGGGAAGAGAGATGCAAGAAGAGGGCTAGGTTTGGAAACTATAAGAATGAGAGCCAGAGGCAGCATTATTATTATGGAAGAGTGAATTATCAAGGCAAGGATAGAGAGAGGAGTTTTAGTAATAGGAAGAGGCCACGGGACAGGGATGAGATTGATAGGAGGGATAAAGATTGTGTCAGGAAAAGAGAACATTGTGGCAGGAGAGATGTTAGAGAACAGAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGATATTGTCTTTCGCTTGGGCCCTTGGGAAGCTGATCGTAATAGAGAAGAAAAAATGGTCAATGATACCAAACAGGAAAGCAATGGAAAGCTTGATAAGCAATCTGAGGATGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGCAGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATCAAAAGTATACATGAGAGTTTACAAAAGCAAGATAAGAAAATGCTTGCTGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAGGTAATTCGTGAGCGGACTGGTTATCAAGTGGGCCACTATTGCGGAGAAATGGGGCAGGATTTCTGGGATGCCCGAAGGTGGCAGCGTGAATTTGACGCCAAGCATGTGTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCCTGATTCTGGACGAGTGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCTGAGTTCTACCACACAACACCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGTCAAGTAGATTGTGCAATTAAAATTCGTAATCTTGAAAGCAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCTATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCGGGCAGTTTATGTTATCTACATGAACAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGATCTAAGGAAGAGCTGCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCCCTTGGTGAACTGGGGCAGTGGTGTGCTTATAAGGTTGCACAATCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTCGATGTCAAGTTTCAGGAATCTTATCTGAGCAAAGTCGTCTCTCTTCTTAAATGCCAACTGTCAGAGGGTGCAGTTTGTGAAAAAAATGCTGGAGTTGATGACTCAGAGTGTGATACAGCTCACAGTGGATCTAAACATGAAGAGGTTGAGGAAGGAGAGCTTCCAGACAGTCACGTGATCTCTGGCGGGGAGCATGTGGACGTCATAATAGGAGCTGCTGTGGCTGATGGCAAAGTGACCCCCAAGGTGCAGGCACTGATCAAAATACTTCTCAAGTATCAGCACACGGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTCGTCTCTGCATTAGTTCTACCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTAATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTGATTCGCTTTGACCTTGCAAAGACCGTTCTGGCATACATTCAGTCTAGAGGCCGTGCTAGAAAGCCTGGATCTGATTACATCCTGATGGTTGAGAGGGGGAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGCAGAGAAGCAATAGAGAGAACAGACCTTAGTCACCTGAAAGACACTTCAAGGTTGATCTCTATAGATACCCGACCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTCAGTTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCGAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCACGAGAAACCAGGAGGTCCCACTGAATATTCTTGCAAGCTTCAACTACCATGTAATGCACCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGACAAAGGAAGTGGAGGAGAAAAAGAAAAGGCCGAGCAAAATGATGAAGGAGATCCACTTCCGGGGACTGCTAGACATAGGGAATTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAACTCCAAAGTGCTTCATCTCTATATGTATGCTGTGAAGTGTGAAAATGTAGGCCACTCAAAGGATCTGTTCTTGACTCAAGTTTCAGATTTTGTAGTGCTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTATAGGGTCGATAGATATTACTGAGAGTCAGTTGGCATCCTTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCGACAACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAATTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAAAATCCCCTCCAGAGAGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCTCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTGACAGAGATGCCATGCAAACACAAAAGCAAATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCAGCAGAGAACTCCTTCCCAAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCCTATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATATACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATATTGCAAGAATCTTCTATCCCCTCGATTTGAACACAGTGAAGCATATGAAAATGAATCTGAAGAGAATCATGACAAGACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTTGTACACCCACTGCCCGGATCGCTTGTTCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAATTCAGCTTAAGAATATGATAAAGTATCCTGTCCAGTCTTTAAAGATCTTGGAAGCCTTGACTGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGAGCAGAGCTTCTAGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTTCTGAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATTTCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCTAGATGGGCCGCTCCTGGGGTGCTGCCTGTCTTTGACGAGGATACCAAGGATGGGGAGTCATCGTTATTTGACCAGGAGCAATCCATTTCTAAGACTGAGAGGATGGAGTGTCATACTGATGGATATCAGGATGAAATGGAAGACGGAGAACTTGAGAGTGATTCAAGTTCGTACAGAGTTCTGTCCAGCAAGACTCTTGCTGATGTTGTGGAAGCACTGATTGGGATATATTATGTCCAAGGTGGTAAGATTGCTGCTAACCACCTTATGAAATGGGTTGGTATTCAAATAGAATTTGATCCTGATGAGATGGAGTGTACAAGAAGGCCATTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGTTTTAGAAGGTGCTTTGAATATCAAGTTTAAAGACAGGGGGCTACTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTGTCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCTGTCTTGGACCATCTTATCACCAGGCATTTGTTTTTCACTTACACAGATCTTCCACCAGGACGCCTGACTGACCTTAGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAGCACAATCTTCACGTGCATCTTCGACATGGGTCCAGTGCTCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCGAAGCCAGGGTTTAACTCATTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGGATACTTCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTACAAGAGCGATGTCAGCAGCAGGCCGAAGGCTTAGAGTATAGAGCGAGTCGTATGGGGAATTTGGCCACTGTAGAAGTATTTATTGATGGGGTGCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAGTTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGCAAAAACTCTGGAGCAGAACGATGAAAACGGGAAAAAGAATGCAAACCACACATTTACAAGACAAACATTAAATGATATATGTTTGCGAAGAAATTGGCCTATGCCATTCTACCGGTGCGTGAGTGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTGCGCGTCAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTGGAACTACTAAATAAATTGTACTCTTGA 5829 0.4387 MEDGNRVVAGEDQVGHRSSPSYWLDACEDISCDFIDFDVSSIVSEQPDSTSNQDFFGGIDRILDSIKNGGGLPLDVEPNSNSNVTAAAEAGGGGGGGVSLTPIANAGSNGTLEIHDRNGESNGFHKPSNGIEGEENGVQSPNRGRDLHDVDGEERCKKRARFGNYKNESQRQHYYYGRVNYQGKDRERSFSNRKRPRDRDEIDRRDKDCVRKREHCGRRDVREQRGYWERDKSGSNDIVFRLGPWEADRNREEKMVNDTKQESNGKLDKQSEDAKERVPEEKARQYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSIHESLQKQDKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDAKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAGSLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGSKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVCEKNAGVDDSECDTAHSGSKHEEVEEGELPDSHVISGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISIDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKVLHLYMYAVKCENVGHSKDLFLTQVSDFVVLFGNELDAEVLSMSMDLFIARTVTTKASLVFIGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDNSVDPMNQIDWHLVETIIGADAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPDRDAMQTQKQINMTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAYENESEENHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMIKYPVQSLKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLFQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQEQSISKTERMECHTDGYQDEMEDGELESDSSSYRVLSSKTLADVVEALIGIYYVQGGKIAANHLMKWVGIQIEFDPDEMECTRRPFNVPDSILRSVDFDVLEGALNIKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRMGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKTLEQNDENGKKNANHTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00022 1942 ProSitePatterns Ribonuclease III family signature. 1640 1648 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 850 IPR001650 -
Gabi1929g00022 1942 Gene3D paz domain 1237 1359 - -
Gabi1929g00022 1942 FunFam endoribonuclease Dicer homolog 1 1870 1939 - -
Gabi1929g00022 1942 SUPERFAMILY RNase III domain-like 1377 1582 IPR036389 GO:0004525|GO:0006396
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 967 990 - -
Gabi1929g00022 1942 ProSiteProfiles Ribonuclease III family domain profile. 1404 1564 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 Pfam Dicer dimerisation domain 878 966 - -
Gabi1929g00022 1942 Gene3D - 277 521 IPR027417 -
Gabi1929g00022 1942 SMART helicmild6 719 805 IPR001650 -
Gabi1929g00022 1942 SMART ultradead3 279 482 IPR014001 -
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 180 202 - -
Gabi1929g00022 1942 FunFam Endoribonuclease dicer-like 1 873 974 - -
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 139 166 - -
Gabi1929g00022 1942 Pfam Ribonuclease III domain 1640 1753 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 Pfam Ribonuclease III domain 1418 1564 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 ProSiteProfiles Ribonuclease III family domain profile. 1605 1753 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 467 IPR014001 -
Gabi1929g00022 1942 SUPERFAMILY RNase III domain-like 1604 1775 IPR036389 GO:0004525|GO:0006396
Gabi1929g00022 1942 SMART PAZ_2_a_3 1221 1385 IPR003100 GO:0005515
Gabi1929g00022 1942 CDD DSRM_DCL_plant 1870 1931 - -
Gabi1929g00022 1942 FunFam Endoribonuclease dicer-like 1 677 839 - -
Gabi1929g00022 1942 CDD DEXHc_dicer 282 481 - -
Gabi1929g00022 1942 Gene3D - 1870 1940 - -
Gabi1929g00022 1942 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 878 973 IPR005034 GO:0016891
Gabi1929g00022 1942 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1779 1842 IPR014720 -
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 107 202 - -
Gabi1929g00022 1942 PANTHER DICER-RELATED 1226 1844 - -
Gabi1929g00022 1942 Gene3D Ribonuclease III domain 1601 1774 IPR036389 GO:0004525|GO:0006396
Gabi1929g00022 1942 Gene3D Ribonuclease III domain 1384 1577 IPR036389 GO:0004525|GO:0006396
Gabi1929g00022 1942 SMART DRBM_3 1780 1841 IPR014720 -
Gabi1929g00022 1942 SMART DRBM_3 1865 1938 IPR014720 -
Gabi1929g00022 1942 SUPERFAMILY PAZ domain 1239 1361 IPR036085 GO:0005515
Gabi1929g00022 1942 FunFam Endoribonuclease dicer-like protein 1383 1576 - -
Gabi1929g00022 1942 Gene3D Dicer dimerisation domain 873 975 IPR038248 -
Gabi1929g00022 1942 CDD RIBOc 1621 1776 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1864 1937 - -
Gabi1929g00022 1942 Pfam Helicase conserved C-terminal domain 686 803 IPR001650 -
Gabi1929g00022 1942 Pfam Type III restriction enzyme, res subunit 289 449 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gabi1929g00022 1942 FunFam Endoribonuclease Dicer 1 1241 1359 - -
Gabi1929g00022 1942 SMART riboneu5 1620 1776 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 SMART riboneu5 1400 1584 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 FunFam Endoribonuclease dicer-like protein 278 518 - -
Gabi1929g00022 1942 CDD PAZ_CAF_like 1214 1363 - -
Gabi1929g00022 1942 Pfam PAZ domain 1239 1381 IPR003100 GO:0005515
Gabi1929g00022 1942 SUPERFAMILY dsRNA-binding domain-like 1868 1938 - -
Gabi1929g00022 1942 FunFam Endoribonuclease dicer-like 1 1600 1774 - -
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 250 279 - -
Gabi1929g00022 1942 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1864 1939 IPR014720 -
Gabi1929g00022 1942 CDD RIBOc 1402 1586 IPR000999 GO:0004525|GO:0006396
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 964 990 - -
Gabi1929g00022 1942 Gene3D - 1777 1854 - -
Gabi1929g00022 1942 ProSiteProfiles PAZ domain profile. 1221 1361 IPR003100 GO:0005515
Gabi1929g00022 1942 Gene3D - 676 842 IPR027417 -
Gabi1929g00022 1942 MobiDBLite consensus disorder prediction 636 656 - -
Gabi1929g00022 1942 SUPERFAMILY dsRNA-binding domain-like 1735 1861 - -
Gabi1929g00022 1942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 817 IPR027417 -
Gabi1929g00022 1942 CDD SF2_C_dicer 683 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00022 Gabi-Chr1929 120128 131703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00022 702 845 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 3.80e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00022 K11592 - gmx:100811631 3397.45