Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00020 ATGGCGAAGGTCGTTGACGTTGAGCGTTATAGTGAAGACAATAAGAAACAGGCGCAAGAATTAGAAGATGAAGAAAGCTTCTCGTATGCTGTGCAGCTTGGCAACTCTGTTGTGCTTCCCATGGCACTCAAATCCGCAACTGATCTGGGCGTATTTGATGTATTGCAGAAAGCTGGTAGCGGTGCTAACCTCTCTGCAAAGGAGATTGCATCCCAGCTTTCATGCGAGAACCCTCAAGCACCAACGATGTTAGATCGTCTCCTTGCTCTTCTAGCCTCTCACTCTATACTTAAATGTTCGGTCCTTCCTGTTCCTGATGAGAAAAACCTTGGATCCTTTCAAAGACTATATAGCATGGCTCCTGTCGCCAAATTCTTCGCCCCCGATTCTGATGGTTTTTCATTAGGGCCCTTGTTGGCCTTGTTACAAGATAAGATCTTCTTAGAAAGCTGGTCCCAGCTGAAAGATGCGATTCGGGAAGGGGGCATTCCATTCAACAGGGTTCATGGTACACATGCCTTTGAGTATCCAGGCTTGGACTCAAGGTTCAATGATGTTTTTAATTCAGCAATGATCAATCACACCACTCTAGTTATGAAGAAGGTTCTGGAATGCTACAAAGGTTTTGATGACATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGAATTAACATTAACATGATCACTTCCAAATACCCTCATATCCAGGGTGTCAATTTCGACTTGCCTCATGTCATAGAACTCGCCCCTTCCTATCCTGGAGTGGAACACGTTGGCGGAGATATGTTTGCAAGTGTGCCTAAGGGAGATGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGCACTGCTTGAAGCTGTTGAAGAATTGCTATGATGCAATTCCTGATGATGGAAAGGTGATAGTAGTGGAGGCAGTTCTTCCTATTATACCTGAGACTAATGCTGCTTGGAAGTCGGTGTCCCAAACGGATGTTCTAATGATGACACAAAACCCTGGAGGGAAAGAGCGAAGTGAGCAAGAATACATGGAATTGGCAACTGCAGCTGGATTTAGTGGCATTAGATATGAATGCTATGTCCGCACCTTTTGGGTTATGGAGTTCTTCAAGTAA 1125 0.4453 MAKVVDVERYSEDNKKQAQELEDEESFSYAVQLGNSVVLPMALKSATDLGVFDVLQKAGSGANLSAKEIASQLSCENPQAPTMLDRLLALLASHSILKCSVLPVPDEKNLGSFQRLYSMAPVAKFFAPDSDGFSLGPLLALLQDKIFLESWSQLKDAIREGGIPFNRVHGTHAFEYPGLDSRFNDVFNSAMINHTTLVMKKVLECYKGFDDIKRLVDVGGGLGININMITSKYPHIQGVNFDLPHVIELAPSYPGVEHVGGDMFASVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPDDGKVIVVEAVLPIIPETNAAWKSVSQTDVLMMTQNPGGKERSEQEYMELATAAGFSGIRYECYVRTFWVMEFFK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00020 374 Gene3D Vaccinia Virus protein VP39 128 374 IPR029063 -
Gabi1929g00020 374 FunFam Caffeic acid 3-O-methyltransferase 9 126 - -
Gabi1929g00020 374 SUPERFAMILY "Winged helix" DNA-binding domain 22 129 IPR036390 -
Gabi1929g00020 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 372 IPR029063 -
Gabi1929g00020 374 FunFam Caffeic acid O-methyltransferase 127 374 - -
Gabi1929g00020 374 Coils Coil 4 24 - -
Gabi1929g00020 374 PANTHER O-METHYLTRANSFERASE 33 359 IPR016461 GO:0008168
Gabi1929g00020 374 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Gabi1929g00020 374 PIRSF O-mtase 7 374 IPR016461 GO:0008168
Gabi1929g00020 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 374 IPR016461 GO:0008168
Gabi1929g00020 374 Gene3D - 8 126 IPR036388 -
Gabi1929g00020 374 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00020 Gabi-Chr1929 103057 106036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00020 20 374 Monolignol Biosynthesis Gene Families AT5G54160 53.239 1.27e-143 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00020 K13066 - gmx:100803633 606.29