Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00019 ATGGCCCCTTCATCAGAAACCAATACAAAAGTCACCAATGGGGATGCCAAGCATCTCAAACCAGTAGAAGGAGAAGATAGCCTCGAGTTTGCCATGGAAACGATGGGTTCTGTTGTGCTTTCAATGGCTTTGAGGTCTGCTATGGAGCTTGGCGTCTTTGATGTCATAGCCAAAGCCGGTGAAGGTGCCAAGCTCTCTGCAAATGATATTGCAGTTCAGATTGGCACCAACAACCCTGAAGCACCTTCAATGCTGGATCGTCTTCTCAGGCTGTTGGTTAGTCACTCTGTGCTATATTCCTCTGTTCATGAAGATCCACAAAACCTTGGGTTGCCTCAGAGGTTCTACAGCCTCTCCCATGGGTCCAAATATTTTGTCACTGATGCTGATGGTACGTCAATGGGACCCACGTTAGCATTGCTTCTGGACAAGGTGTTCTACCAAAGCTGGAGCGAGCTAAAAGGAGCGATCATGGAAGGAGGTATACCATTCAACAGGGCTTATGGGATGCATGCCTTTGAGTATCCAAGTGTGGATCCCAGGTTCAATGAGGCTTTCAACGAAGGTATGCTCAACTCCACAAGTATAATTATGAAGAGGATTCTTGAAGTCTACCAAGGTTTTGAACACGTAACTAGACTTGTTGACGTTGGTGGTGGACTTGGGGTCAATCTCAAATTGATAACATCCAAATACCCTCATGTCAAGGGTATTAATTTTGACTTGCCTCATGTCATACAACATGCCCCCCTCTGTGCTGGTGTGGAGCATGTTGGAGGAGATATGTTTCAAAGCGTTCCCACCGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGGATGATGAACACTGCTTGACGCTCTTGAAGAATTGCTACAAAGCTATTCCTGATGATGGAAAGGTTATTGTGGTGGACTATATTCTGCCCGTTGTGCCTGAGACAACAACTACTGCCAAAACTGCTTTCCGATCTGACCTCTTGATGATGACTCAAAACCCTGGTGGGAAAGAGAGGACCCTTCAAGAGTTCATGGAATTAGCTAAAGGATCTGGATTTAGTGGCATCACATCCGTATGCTGTGTCTCTGGCTACTCGGTTATGGAGTTCTTCAAATAG 1122 0.4563 MAPSSETNTKVTNGDAKHLKPVEGEDSLEFAMETMGSVVLSMALRSAMELGVFDVIAKAGEGAKLSANDIAVQIGTNNPEAPSMLDRLLRLLVSHSVLYSSVHEDPQNLGLPQRFYSLSHGSKYFVTDADGTSMGPTLALLLDKVFYQSWSELKGAIMEGGIPFNRAYGMHAFEYPSVDPRFNEAFNEGMLNSTSIIMKRILEVYQGFEHVTRLVDVGGGLGVNLKLITSKYPHVKGINFDLPHVIQHAPLCAGVEHVGGDMFQSVPTGDAIFMKWILHDWDDEHCLTLLKNCYKAIPDDGKVIVVDYILPVVPETTTTAKTAFRSDLLMMTQNPGGKERTLQEFMELAKGSGFSGITSVCCVSGYSVMEFFK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00019 373 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1929g00019 373 PANTHER O-METHYLTRANSFERASE 35 359 IPR016461 GO:0008168
Gabi1929g00019 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 371 IPR029063 -
Gabi1929g00019 373 FunFam Caffeic acid 3-O-methyltransferase 12 125 - -
Gabi1929g00019 373 PIRSF O-mtase 9 373 IPR016461 GO:0008168
Gabi1929g00019 373 Gene3D - 11 125 IPR036388 -
Gabi1929g00019 373 FunFam Caffeic acid O-methyltransferase 126 373 - -
Gabi1929g00019 373 Pfam O-methyltransferase domain 150 355 IPR001077 GO:0008171
Gabi1929g00019 373 SUPERFAMILY "Winged helix" DNA-binding domain 25 128 IPR036390 -
Gabi1929g00019 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 373 IPR016461 GO:0008168
Gabi1929g00019 373 Gene3D Vaccinia Virus protein VP39 126 373 IPR029063 -
Gabi1929g00019 373 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00019 Gabi-Chr1929 75433 77350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00019 18 373 Monolignol Biosynthesis Gene Families AT5G54160 53.352 1.92e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00019 K13066 - gmx:100789402 493.041