Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00017 ATGAGACTGGGAGACAAAGCTAGGTCCCTACCGCGGTCCCAACCATTCTTTGGGGAGAATTGTTTGGAGCAAGGCTTCTTTGGTACAGAGAGCTTGAAACTTGAGAAGGATGAACAATCTCTGATATCAAGCTTAGAGGACAACATGCCATTCCTGCAGATGCTTCAGAGTGTAGAATCCCCACAAATTTCCCCCTTCAAAGAGCCAAGCTTTCAGACACTCATAAGACTGCAGCACCTGAAGAAGCCATGGGAAGGGATAGCCTGCATACCCAGATTTGAGACCCAAGAGCTTGAGAGCTGTGTCACCAATGACCTGGTGGAGATGCAGTCACCATTGAAATCCGAAAGCAATGACCTTCAACATCCGCATTCAATAGCGACCCAGTGCAATCAAGAGCGACCCAAATCAGCTCAAGATTGTAGCAAGGATGGTATTGGAGATTCTGCTGCTGTTTGGGCTAACTCACAATCATGGCATAAAGGCACCCAGACCCAGTGCCCCAAAACTCAGCTAGCTACGCGGGAACGGCGAAAGAGAAAGAGAACGAGACAAACCAAGAACAAGGAAGACGTTGAGAACCAGCGAATGACACACATTGCTGTGGAACGCAACAGGAGACGCCAAATGAATGACCATCTCAGTGTCCTCAAGTCCCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCATGCATCAATCATTGGAGGCGCAATAGACTTTGTAAAGGAATTGGAACAGTTACTTCAATCCCTTGAGGCACAGAAAAAGATGAGAAAGAACGACTATGTCGGTTCCAGTGAGTTGTTTGAATTTGAACCTGGTTATGAAATGAGTTCATCCCCGAAAGAAGCAAAGTGTGGGGATGAGGTTAAAGAAGCAAAGTGTGGGGGTGAGGTTAAGGCAGAAAAAAAGTCACAGGCAGTAGCCGTAGAGGTCACTGGGATACAAACCCATGTGAACTTGAAAATTCAGTGCCAAAGGAGACATGGGCAATTGATAAAAGCTATTGTTGCCTTGGAGGACCTTAGGTTAACTATTCTGCATCTTAACATCACATCCTTAGAGGCTTCGGTTCTCTACTCTTTCAATCTCAAGATTGAAGAAGACAGTAAGATAGGCTCAGCAAGTGAAATTGCAGAAGCAGTTGATCAAATATTTAGCTCCATTAATGGCATCTAA 1182 0.456 MRLGDKARSLPRSQPFFGENCLEQGFFGTESLKLEKDEQSLISSLEDNMPFLQMLQSVESPQISPFKEPSFQTLIRLQHLKKPWEGIACIPRFETQELESCVTNDLVEMQSPLKSESNDLQHPHSIATQCNQERPKSAQDCSKDGIGDSAAVWANSQSWHKGTQTQCPKTQLATRERRKRKRTRQTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLKSLMPPSYIQRGDHASIIGGAIDFVKELEQLLQSLEAQKKMRKNDYVGSSELFEFEPGYEMSSSPKEAKCGDEVKEAKCGGEVKAEKKSQAVAVEVTGIQTHVNLKIQCQRRHGQLIKAIVALEDLRLTILHLNITSLEASVLYSFNLKIEEDSKIGSASEIAEAVDQIFSSINGI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00017 393 MobiDBLite consensus disorder prediction 158 193 - -
Gabi1929g00017 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 262 IPR036638 GO:0046983
Gabi1929g00017 393 SMART finulus 200 251 IPR011598 GO:0046983
Gabi1929g00017 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 245 IPR011598 GO:0046983
Gabi1929g00017 393 Coils Coil 242 262 - -
Gabi1929g00017 393 Gene3D - 191 265 IPR036638 GO:0046983
Gabi1929g00017 393 Pfam Helix-loop-helix DNA-binding domain 195 246 IPR011598 GO:0046983
Gabi1929g00017 393 CDD bHLH_AtFAMA_like 197 268 - -
Gabi1929g00017 393 PANTHER TRANSCRIPTION FACTOR FAMA 118 387 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00017 Gabi-Chr1929 44926 49149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00017 43 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 40.997 9.88e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1929g00017 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00017 - - aprc:113862094 454.521