Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00004 ATGGCGGCTAGTTCTACTCTGTCTCTCTGCTTCACCTTACCTTCTTTGTCACTGTTATTCAGGCACAAGCCCCAATTGTTTGCGTGTTCAGCGAGGCCATTTTCTTCTTTGTGTCTTGTTACGGGGCGCAGCTTCAAGGCTAGGGATTCCACGACCATAGCGGCGGAGATTGTGGATGAAGAAGGGGTTGGAGTTGGACAACATGTGGAACGATGGGGCAAGATGGAAAAAGCCACCGAAGTGTACGTGTTCAACCTTCCAAGAAGCTGTGACACAGAACAACTACTTCATATGTTCAAGCCTCACGGAACCATTCTATCTGCAGAGATTTGCCGGAATGAGGAGACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGGGTCTATTAACTCTGCAAAAAACGCAGTTGCTGCATTGGATGGATTGGATGTTGGTGGCCGCGAAATGAGGGTTAGATTTTCAGTTGAGATGAATCGTAAAAGGGAGAATCTTGAGACGATGAACTCCTCGCCCAATAGAACTATATACTATGAAGGTCCTTATAAGTTGTATGTTGGGAATCTTTCTAAGGTTGCTAAAGTGGAAGACTTGAGACAACTTTTTGGAAGATTTGGTAATGTGGCTAGTCTGAGGGTGTTGCGAGATTACAAACAAGGGAGAACCCGGGTCTATGCGTTTATCTCTTATCTTTCAGAGATAGAACGTGATACAGCAATTTCCCTCCATGGAACACTATTTTGTGGTCGTACACTAGTGGTTAGAGAGGGTGTGGATAGAGGGGACTAA 789 0.4537 MAASSTLSLCFTLPSLSLLFRHKPQLFACSARPFSSLCLVTGRSFKARDSTTIAAEIVDEEGVGVGQHVERWGKMEKATEVYVFNLPRSCDTEQLLHMFKPHGTILSAEICRNEETGESRGSAYVTMGSINSAKNAVAALDGLDVGGREMRVRFSVEMNRKRENLETMNSSPNRTIYYEGPYKLYVGNLSKVAKVEDLRQLFGRFGNVASLRVLRDYKQGRTRVYAFISYLSEIERDTAISLHGTLFCGRTLVVREGVDRGD 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00004 262 PANTHER OS02G0815200 PROTEIN 48 255 - -
Gabi1929g00004 262 Gene3D - 46 168 IPR012677 -
Gabi1929g00004 262 Gene3D - 169 260 IPR012677 -
Gabi1929g00004 262 SUPERFAMILY RNA-binding domain, RBD 175 260 IPR035979 GO:0003676
Gabi1929g00004 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Gabi1929g00004 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 252 IPR000504 GO:0003723
Gabi1929g00004 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Gabi1929g00004 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Gabi1929g00004 262 SMART rrm1_1 183 255 IPR000504 GO:0003723
Gabi1929g00004 262 SMART rrm1_1 80 153 IPR000504 GO:0003723
Gabi1929g00004 262 SUPERFAMILY RNA-binding domain, RBD 78 175 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00004 Gabi-Chr1929 15125 16952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00004 59 262 Eukaryotic Initiation Factors Gene Family AT3G16380 26.829 4.17e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00004 - - gsj:114400287 290.426