Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1929g00002 ATGTCGCTTGGAGAGACTGCTTGCAGCTACGCAGCTCTCATCCTTCACGATGATCGAATTCCGGTCACTGCTGATAAGATCTCTACCTTGTTGAAAAGTGCAAAGGTTGAAGTAGAATCGTATTGGCCCAGCTTATTTGCTAAACTTGCTGAGAAGCGAAATTTTGAGGATTTGATAGCGAATGCTGGAGGCGGTGGGGCTTCAGTTGCTGTTGCAGCCGCCCCAGTTGCTGCTGCAGGTGGTGGCAGTGCTGCTGCCGCCGCTGCTCCTGCTGCCGAGGAGAAGAAAAAGGAAGAACCTCAAGAAGAAAGTGATGATGATATGGGATTTAGCTTGTTTGATTAG 345 0.4928 MSLGETACSYAALILHDDRIPVTADKISTLLKSAKVEVESYWPSLFAKLAEKRNFEDLIANAGGGGASVAVAAAPVAAAGGGSAAAAAAPAAEEKKKEEPQEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1929g00002 114 Gene3D - 1 63 IPR038716 -
Gabi1929g00002 114 CDD Ribosomal_P1 5 61 - -
Gabi1929g00002 114 FunFam 60S acidic ribosomal protein P1 1 63 - -
Gabi1929g00002 114 Pfam 60s Acidic ribosomal protein 22 113 - -
Gabi1929g00002 114 Hamap 50S ribosomal protein L12 [rpl12]. 6 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gabi1929g00002 114 MobiDBLite consensus disorder prediction 87 114 - -
Gabi1929g00002 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1929g00002 Gabi-Chr1929 5299 6647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1929g00002 1 114 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.509 3.58e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1929g00002 K02942 - gmx:100791962 125.561