Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1928g00011 ATGTTCCGTGAGCAAAAAATTGTAACCACCAAGGTTGTGCAACCAAGGTTTTTGGGTACTACACCTAAAGTGGTTAGAGTTTCATTGATGGATCACAATGCCACTGATTCTTCCAGTGATGATGAAGAAGAAAGGTTTATTCAGCGCCCAAAGGTGAAGAAATTAGTGAATGAGATCAGAATTCAAGGCTTTTCATTTCCCAAAATGCGGAACAATAGAAGACATGATGACGATGATGGTGTTGGATGTTCAGGTGTGAAACAGCAAGATAAGAGGACTAACCAAGATCATAGAAATATTCAAACCAATCAAAAGTTTCGTGGGGTTCGTCATAGGCCATGGGGAAGATTTTCTGCTGAGATAAGAGATCCTAATAGCCGAACTAGAGTGTGGTTGGGTACTTTTGACACTGCTGAAGAGGCTGCAATGGTTTATGATAGAGCTAATATTAAATTTAGAGGTGCTCATGCTATCACCAATATCATCAAACCTTCATCAAGGGAATCAATGTCCAAGAATGAAGAAGCATGTCATGACGAAGAAGCTATATCCGTTGATTGTGATGTTGGTGGTGATGATGGAATGATTCTTGCACATGAAGATGATGAAGATGATGATGATGACGACGACGACGACGATTCGGGTAAAGGGTTTAATGATTTATTTTCACCTTCCTCTGTTCTTGTGTTTAAGCCTATTGAACCTGTGACTGAAGGGATACCGGTAGAAGAATGGTCTAAAGAGTTAACAACAACTGAAGAACCTGATTCGGGTAAAGGGTTTAATGATTTATCTTCACCTTCCTCTGTTCTTGTGTTTAAGCCTATTGAACCTGTGACTGAAGGGATACCTGTAGAAGAATGGTCTAAAGAGTTAACAACAACCGAAGAACCTTGCTTTTACGATGACTTTACGTTTTTGGATTCATGTTATGAATCTCTTCCTCTTTTATTTTCTAATTACAATGGTGTTGATGCTTCTTTAGTTCTTGATGAGGATTTTAAATCCTGTGAATGGGATGTAGATAATTATTTCTAA 1038 0.3854 MFREQKIVTTKVVQPRFLGTTPKVVRVSLMDHNATDSSSDDEEERFIQRPKVKKLVNEIRIQGFSFPKMRNNRRHDDDDGVGCSGVKQQDKRTNQDHRNIQTNQKFRGVRHRPWGRFSAEIRDPNSRTRVWLGTFDTAEEAAMVYDRANIKFRGAHAITNIIKPSSRESMSKNEEACHDEEAISVDCDVGGDDGMILAHEDDEDDDDDDDDDDSGKGFNDLFSPSSVLVFKPIEPVTEGIPVEEWSKELTTTEEPDSGKGFNDLSSPSSVLVFKPIEPVTEGIPVEEWSKELTTTEEPCFYDDFTFLDSCYESLPLLFSNYNGVDASLVLDEDFKSCEWDVDNYF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1928g00011 345 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Gabi1928g00011 345 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Gabi1928g00011 345 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Gabi1928g00011 345 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Gabi1928g00011 345 MobiDBLite consensus disorder prediction 191 220 - -
Gabi1928g00011 345 MobiDBLite consensus disorder prediction 197 215 - -
Gabi1928g00011 345 SUPERFAMILY DNA-binding domain 105 161 IPR016177 GO:0003677
Gabi1928g00011 345 Gene3D AP2/ERF domain 104 162 IPR036955 GO:0003700|GO:0006355
Gabi1928g00011 345 MobiDBLite consensus disorder prediction 69 94 - -
Gabi1928g00011 345 MobiDBLite consensus disorder prediction 244 263 - -
Gabi1928g00011 345 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Gabi1928g00011 345 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 218 - -
Gabi1928g00011 345 CDD AP2 104 160 IPR001471 GO:0003700|GO:0006355
Gabi1928g00011 345 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Gabi1928g00011 345 MobiDBLite consensus disorder prediction 68 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1928g00011 Gabi-Chr1928 197778 198815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1928g00011 23 198 AP2-EREBP Transcription Factor Family AT4G27950 41.530 1.51e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1928g00011 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1928g00011 - - qsa:O6P43_017734 182.956