Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1928g00009 ATGGTTCTGAGTAGCAGGATTTTCAGTTCTCATATTTTTGTTAATTTCTTGCTGCTGATTAGTTGTGGCATGACCTATGGGACTGTCAGTGATATCCTCTGCTTGAGAAGTATCAAAGATTCCCTTCAAGACCCCAATAATTATTTGGGGTCTTCTTGGAATTTCAACAACAACACTGAAGGGTTTATCTGCAGATTCAATGGGGTTGAATGTTGGCACCCTGATGAGAACAGAGTCTTGAATCTCAAAATGTCAAATATGGGACTCAAGGGCCAGTTTCCTCCTGGCATTATAAATTGCTCAAGCTTAACAGGATTAGATTTTTCAAGTAACAAACTCTCTGGAACCATTCCAGTAAATATATCTACTCTTATACCATATGTGACATCACTTGATCTATCTTCAAATGAATTTTCTGGTGCCATACCTGAGAGTCTTGCGAATTGTACCTATCTCAATACCCTCAAACTCGATCAGAATCGACTCACTGGTCAAATTCCTCCACGAATCGGTGTTCTCACACGAATTAAGACATTTACTGTATCCAACAATCTTTTGACAGGGCCAGTTCCTACCTTTACCAATGATCAAGTTATGGTAAGTTATGCAAATAATCAAGGCCTATGTGGAGGAGCTTCATTGACGCCTTGCCCGGGTAGTGATTCGAAGAGTAGCACTAACACTGCAGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTCTTGCAGCAATAGGATTGGGTGTTGTTATGTTTTTCTTTGTTCGCCGTGTTCCTTTCATGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGAAGTCTAAAGGGAACTAAAGCAATCAAGGTTTCTATGTTTGAGAAATCAATTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGTAAAAGCAATATCATTGGGACAGGAAGAACAGGAACTGTTTACAAAGCTGCTCTTGATGATGGCACAACACTTATGGTTAAGAGATTGCAGGAATCTCAATACTCTGAGAAAGAGTTTATGTCTGAGATGGGTACTCTAGGGACCGTCAAACATCGTAACCTGGTTCCTCTTTTAGGTTTTTGTATGGCTAAAAAAGAGAGGCTTGTGGTCTATAAAAACATGCCAAATGGAAATCTCCATGATCAGTTACATCCTGCTTCTGGTGAGTGTACCCTTGAGTGGCCTTTGAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCATAGCTGCAATCCCCGTATTATCCATCGAAACATAAGCTCTAAGTGCATCTTGTTAGATGCAGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCCAGACTAATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAGTATGCAAGAACTTTGGTTGCTACTCCTAAGGGGGATATTTATAGCTTTGGGACTGTGCTTCTTGAGCTTGTGACTGGTGAAAGAGCTACCAATGTAGCTAAAGCTCCAGAAACTTTTAAAGGAAATCTGGTAGAATGGATTGCGCAACTCTCAAGCAACTCGCAACTCCAGGACGCCATTGATGAATCACTAGTTGGCAAGGGTGTTGATAATGAGCTTTTCCAATTTCTAAAGGTCGCGTGCAACTGTGTTTCACCAACTCCAAAGGAGAGGCCCACCATGTTTGAAGTATATCAGCTTTTAAGAGCTATTGGGGAAAAATACAATTTCACTACTGAGGATGAGATATTGGTACCTGTAGATATTGGTGATGATAACTTGGAGGAACTTATTGTAGCGCGAGGAGATTGTTGA 1848 0.4085 MVLSSRIFSSHIFVNFLLLISCGMTYGTVSDILCLRSIKDSLQDPNNYLGSSWNFNNNTEGFICRFNGVECWHPDENRVLNLKMSNMGLKGQFPPGIINCSSLTGLDFSSNKLSGTIPVNISTLIPYVTSLDLSSNEFSGAIPESLANCTYLNTLKLDQNRLTGQIPPRIGVLTRIKTFTVSNNLLTGPVPTFTNDQVMVSYANNQGLCGGASLTPCPGSDSKSSTNTAVIAGAAVGGVTLAAIGLGVVMFFFVRRVPFMKKEEDPEGNKWARSLKGTKAIKVSMFEKSISKMKLSDLMKATNNFSKSNIIGTGRTGTVYKAALDDGTTLMVKRLQESQYSEKEFMSEMGTLGTVKHRNLVPLLGFCMAKKERLVVYKNMPNGNLHDQLHPASGECTLEWPLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDIYSFGTVLLELVTGERATNVAKAPETFKGNLVEWIAQLSSNSQLQDAIDESLVGKGVDNELFQFLKVACNCVSPTPKERPTMFEVYQLLRAIGEKYNFTTEDEILVPVDIGDDNLEELIVARGDC 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1928g00009 615 Gene3D Transferase(Phosphotransferase) domain 1 380 598 - -
Gabi1928g00009 615 SUPERFAMILY L domain-like 29 193 - -
Gabi1928g00009 615 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 266 379 - -
Gabi1928g00009 615 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 380 599 - -
Gabi1928g00009 615 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Gabi1928g00009 615 Pfam Protein tyrosine and serine/threonine kinase 308 578 IPR001245 GO:0004672|GO:0006468
Gabi1928g00009 615 Gene3D Ribonuclease Inhibitor 30 219 IPR032675 -
Gabi1928g00009 615 Gene3D Phosphorylase Kinase; domain 1 266 378 - -
Gabi1928g00009 615 ProSiteProfiles Protein kinase domain profile. 305 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1928g00009 615 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Gabi1928g00009 615 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Gabi1928g00009 615 FunFam Nuclear pore complex protein NUP107 28 192 - -
Gabi1928g00009 615 CDD STKc_IRAK 311 579 - -
Gabi1928g00009 615 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 82 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1928g00009 Gabi-Chr1928 93433 96762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1928g00009 13 593 Receptor kinase-like Gene Family AT3G28450 45.656 1.57e-178 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Gabi1928g00009 PK_Tyr_Ser-Thr 5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1928g00009 - - psat:127076602 978.008